Evidence map›Paper›PMID 25915761›Full record

ArticlePloS one2015

Gp120 on HIV-1 Virions Lacks O-Linked Carbohydrate.

Elizabeth Stansell, Maria Panico, Kevin Canis, Poh-Choo Pang, Laura Bouché, Daniel Binet, Michael-John O'Connor, Elena Chertova, Julian Bess, Jeffrey D Lifson and 4 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Cryo-EM structures of prefusion SIV envelope trimer.Nature structural & molecular biology · 2022
    Article
  6. Article
  7. MASS SPECTROMETRY IN VIROLOGICAL SCIENCES.Mass spectrometry reviews · 2020
    Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Structural principles controlling HIV envelope glycosylation.Current opinion in structural biology · 2017
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Elizabeth StansellNew England Primate Research Center, Harvard Medical School, Southborough, Massachusetts, 01772, United States of America.
Maria PanicoDepartment of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, United Kingdom.
Kevin CanisDepartment of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, United Kingdom.
Poh-Choo PangDepartment of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, United Kingdom.
Laura BouchéDepartment of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, United Kingdom.
Daniel BinetMS-RTC (Mass Spectrometry Research and Training Centre), Suite 3.1 Lido Medical Centre, St. Saviours Road, Jersey, JE2 7LA, United Kingdom.
Michael-John O'ConnorMS-RTC (Mass Spectrometry Research and Training Centre), Suite 3.1 Lido Medical Centre, St. Saviours Road, Jersey, JE2 7LA, United Kingdom.
Elena ChertovaAIDS and Cancer Virus Program, Leidos Biomedical Research, Inc., Frederick National Laboratory, Frederick, Maryland, 21702, United States of America.
Julian BessAIDS and Cancer Virus Program, Leidos Biomedical Research, Inc., Frederick National Laboratory, Frederick, Maryland, 21702, United States of America.
Jeffrey D LifsonAIDS and Cancer Virus Program, Leidos Biomedical Research, Inc., Frederick National Laboratory, Frederick, Maryland, 21702, United States of America.
Stuart M HaslamDepartment of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, United Kingdom.
Howard R MorrisDepartment of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, United Kingdom; MS-RTC (Mass Spectrometry Research and Training Centre), Suite 3.1 Lido Medical Centre, St. Saviours Road, Jersey, JE2 7LA, United Kingdom.
Ronald C DesrosiersNew England Primate Research Center, Harvard Medical School, Southborough, Massachusetts, 01772, United States of America.
Anne DellDepartment of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, United Kingdom.
Imperial College London · GBLeidos Biomedical Research Inc. (United States)Harvard University · USLeidos (United States) · USNew England Biolabs (United States) · US

Funding

ZETA CHAIN OF T CELL RECEPTOR INTERACTS W/ NEF OF SIV &HIV2P51RR000168 · NCRR · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WESTMORELAND, SUSAN V. · 1985 to 2011
$139.3M
The impact of HIV viral diversity and cellular immunity on HIV pathogenesisP30AI060354 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI ROBERT A. PARKER · 2004 to 2026
$94.4M
Functional Role of O-Glycosylation of HIV-1R01AI104523 · NIAID · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI DESROSIERS, RONALD C · 2013 to 2024
$4.1M
MOLECULAR BASIS FOR SIV PATHOGENICITYR01AI025328 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI DESROSIERS, RONALD C · 1987 to 2010
$2.0M
Biotechnology and Biological Sciences Research Council BB/F008309/1Biotechnology and Biological Sciences Research Council BBF0083091Biotechnology and Biological Sciences Research Council BB/K015164/1Biotechnology and Biological Sciences Research Council BBK016164/1CCR NIH HHS HHSN261200800001CNCI NIH HHS HHSN261200800001ENCRR NIH HHS P51 RR000168NCRR NIH HHS P51-RR000168NIAID NIH HHS P30 AI060354NIAID NIH HHS P30-AI060354NIAID NIH HHS R01 AI025328NIAID NIH HHS R01-AI025328NIAID NIH HHS R01 AI104523NIAID NIH HHS R01-AI104523Wellcome TrustWellcome Trust 082098
6 · The paper itself

Abstract

As HIV-1-encoded envelope protein traverses the secretory pathway, it may be modified with N- and O-linked carbohydrate. When the gp120s of HIV-1 NL4-3, HIV-1 YU2, HIV-1 Bal, HIV-1 JRFL, and HIV-1 JRCSF were expressed as secreted proteins, the threonine at consensus position 499 was found to be O-glycosylated. For SIVmac239, the corresponding threonine was also glycosylated when gp120 was recombinantly expressed. Similarly-positioned, highly-conserved threonines in the influenza A virus H1N1 HA1 and H5N1 HA1 envelope proteins were also found to carry O-glycans when expressed as secreted proteins. In all cases, the threonines were modified predominantly with disialylated core 1 glycans, together with related core 1 and core 2 structures. Secreted HIV-1 gp140 was modified to a lesser extent with mainly monosialylated core 1 O-glycans, suggesting that the ectodomain of the gp41 transmembrane component may limit the accessibility of Thr499 to glycosyltransferases. In striking contrast to these findings, gp120 on purified virions of HIV-1 Bal and SIV CP-MAC lacked any detectable O-glycosylation of the C-terminal threonine. Our results indicate the absence of O-linked carbohydrates on Thr499 as it exists on the surface of virions and suggest caution in the interpretation of analyses of post-translational modifications that utilize recombinant forms of envelope protein.

Indexed as

CarbohydratesHEK293 CellsHeLa CellsHIV-1HIV Envelope Protein gp120HumansInfluenza A virusMembrane GlycoproteinsProtein Processing, Post-TranslationalRecombinant ProteinsThreonineViral Envelope ProteinsVirionCarbohydratesgp120 protein, Human immunodeficiency virus 1gp120 protein, Simian immunodeficiency virusHIV Envelope Protein gp120Membrane GlycoproteinsRecombinant ProteinsThreonineViral Envelope Proteins

Identifiers

PMID25915761
PMCPMC4410959
OpenAlexW2032664106

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.