Evidence map›Paper›PMID 25915206›Full record

ArticlePloS one2015

MeDiA: Mean Distance Association and Its Applications in Nonlinear Gene Set Analysis.

Hesen Peng, Junjie Ma, Yun Bai, Jianwei Lu, Tianwei Yu

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Hesen PengDepartment of Biostatistics and Bioinformatics, Emory University, Atlanta, Georgia, United States of America.
Junjie MaDepartment of Hematology, Yantai Yuhuangding Hospital, Yantai, Shandong, China.
Yun BaiDepartment of Pharmaceutical Sciences, School of Pharmacy, Philadelphia College of Osteopathic Medicine, Suwanee, Georgia, United States of America.
Jianwei LuSchool of Software Engineering, Tongji University, Shanghai, China; Advanced Institute of Translational Medicine, Tongji University, Shanghai, China.
Tianwei YuDepartment of Biostatistics and Bioinformatics, Emory University, Atlanta, Georgia, United States of America.

Funding

Systems Biological Analysis of Innate and Adaptive Responses to VaccinationU19AI090023 · NIAID · EMORY UNIVERSITY · PI AHMED, RAFI, LI, SHUZHAO · 2010 to 2021
$45.0M
Metabolomics of subclinical and clinical cardiovascular diseaseP20HL113451 · NHLBI · EMORY UNIVERSITY · PI JONES, DEAN PAUL · 2012 to 2016
$4.3M
NHLBI NIH HHS P20 HL113451NHLBI NIH HHS P20HL113451NIAID NIH HHS U19 AI090023NIAID NIH HHS U19AI090023
6 · The paper itself

Abstract

Probabilistic association discovery aims at identifying the association between random vectors, regardless of number of variables involved or linear/nonlinear functional forms. Recently, applications in high-dimensional data have generated rising interest in probabilistic association discovery. We developed a framework based on functions on the observation graph, named MeDiA (Mean Distance Association). We generalize its property to a group of functions on the observation graph. The group of functions encapsulates major existing methods in association discovery, e.g. mutual information and Brownian Covariance, and can be expanded to more complicated forms. We conducted numerical comparison of the statistical power of related methods under multiple scenarios. We further demonstrated the application of MeDiA as a method of gene set analysis that captures a broader range of responses than traditional gene set analysis methods.

Indexed as

Models, StatisticalAlgorithmsCeliac DiseaseComputational BiologyGene Expression ProfilingGene Regulatory NetworksHumansLung NeoplasmsSignal Transduction

Identifiers

PMID25915206
PMCPMC4411044

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.