Evidence map›Paper›PMID 25915030›Full record

ArticleInternational journal of molecular sciences2015

Proteomic Insights into Sulfur Metabolism in the Hydrogen-Producing Hyperthermophilic Archaeon Thermococcus onnurineus NA1.

Yoon-Jung Moon, Joseph Kwon, Sung-Ho Yun, Hye Li Lim, Jonghyun Kim, Soo Jung Kim, Sung Gyun Kang, Jung-Hyun Lee, Seung Il Kim, Young-Ho Chung

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
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  3. Draft genome sequence ofMicrobiology resource announcements · 2024
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  4. NADPApplied and environmental microbiology · 2023
    Article
  5. Article
  6. Direct Electron Transfer between theApplied and environmental microbiology · 2020
    Article
  7. Metabolic Adaptation to Sulfur of HyperthermophilicInternational journal of molecular sciences · 2020
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Yoon-Jung MoonDivision of Life Science, Korea Basic Science Institute, Daejeon 305-806, Korea. moonyj@kbsi.re.kr.
Joseph KwonDivision of Life Science, Korea Basic Science Institute, Daejeon 305-806, Korea. joseph@kbsi.re.kr.
Sung-Ho YunDivision of Life Science, Korea Basic Science Institute, Daejeon 305-806, Korea. sungho@kbsi.re.kr.
Hye Li LimDivision of Life Science, Korea Basic Science Institute, Daejeon 305-806, Korea. bluehyeli@naver.com.
Jonghyun KimDivision of Life Science, Korea Basic Science Institute, Daejeon 305-806, Korea. joseph@kbsi.re.kr.
Soo Jung KimDivision of Life Science, Korea Basic Science Institute, Daejeon 305-806, Korea. sjkim313@kbsi.re.kr.
Sung Gyun KangMarine Biotechnology Research Division, Korea Institute of Ocean Science and Technology, Ansan 426-744, Korea. sgkang@kiost.ac.
Jung-Hyun LeeMarine Biotechnology Research Division, Korea Institute of Ocean Science and Technology, Ansan 426-744, Korea. jlee@kiost.ac.
Seung Il KimDivision of Life Science, Korea Basic Science Institute, Daejeon 305-806, Korea. ksi@kbsi.re.kr.
Young-Ho ChungDivision of Life Science, Korea Basic Science Institute, Daejeon 305-806, Korea. chungyh@kbsi.re.kr.
Korea Basic Science Institute · KRKorea Institute of Ocean Science and Technology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The hyperthermophilic archaeon Thermococcus onnurineus NA1 has been shown to produce H₂ when using CO, formate, or starch as a growth substrate. This strain can also utilize elemental sulfur as a terminal electron acceptor for heterotrophic growth. To gain insight into sulfur metabolism, the proteome of T. onnurineus NA1 cells grown under sulfur culture conditions was quantified and compared with those grown under H₂-evolving substrate culture conditions. Using label-free nano-UPLC-MSE-based comparative proteomic analysis, approximately 38.4% of the total identified proteome (589 proteins) was found to be significantly up-regulated (≥1.5-fold) under sulfur culture conditions. Many of these proteins were functionally associated with carbon fixation, Fe-S cluster biogenesis, ATP synthesis, sulfur reduction, protein glycosylation, protein translocation, and formate oxidation. Based on the abundances of the identified proteins in this and other genomic studies, the pathways associated with reductive sulfur metabolism, H₂-metabolism, and oxidative stress defense were proposed. The results also revealed markedly lower expression levels of enzymes involved in the sulfur assimilation pathway, as well as cysteine desulfurase, under sulfur culture condition. The present results provide the first global atlas of proteome changes triggered by sulfur, and may facilitate an understanding of how hyperthermophilic archaea adapt to sulfur-rich, extreme environments.

Indexed as

ProteomeProteomicsArchaeal ProteinsCarbon DioxideGene ExpressionGene Expression Regulation, ArchaealGlycosylationHydrogenLipidsOxidation-ReductionProtein TransportProteolysisSulfurThermococcusArchaeal ProteinsCarbon DioxideHydrogenLipidsProteomeSulfur

Identifiers

PMID25915030
PMCPMC4463584
OpenAlexW2019819897

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.