Evidence map›Paper›PMID 25914711›Full record

ReviewFrontiers in plant science2015

Vacuolar processing enzyme in plant programmed cell death.

Noriyuki Hatsugai, Kenji Yamada, Shino Goto-Yamada, Ikuko Hara-Nishimura

Open access · goldAbstract readReview
In one paragraph

Review in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
97citing papers in PubMed, 1 pooled it
9.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

97 citing papers in PubMed, 1 synthesis or guideline pooled it, 210 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Global perspective on the genetic architecture of susceptibility to spot form net blotch in barley.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
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  10. Autophagy and Bacterial infections.Autophagy reports · 2025
    Review
  11. Article
  12. Review
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  15. Autophagy in plants.Autophagy reports · 2024
    Review
  16. Article
  17. Article
  18. The putative vacuolar processing enzyme gene TaVPE3cB is a candidate gene for wheat stem pith-thickness.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  19. Article
  20. Article

37 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Noriyuki HatsugaiDepartment of Plant Biology, Microbial and Plant Genomics Institute, University of Minnesota St. Paul, MN, USA.
Kenji YamadaDepartment of Botany, Graduate School of Science, Kyoto University Kyoto, Japan.
Shino Goto-YamadaDepartment of Botany, Graduate School of Science, Kyoto University Kyoto, Japan.
Ikuko Hara-NishimuraDepartment of Botany, Graduate School of Science, Kyoto University Kyoto, Japan.
Kyoto University · JPUniversity of Minnesota · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vacuolar processing enzyme (VPE) is a cysteine proteinase originally identified as the proteinase responsible for the maturation and activation of vacuolar proteins in plants, and it is known to be an ortholog of animal asparaginyl endopeptidase (AEP/VPE/legumain). VPE has been shown to exhibit enzymatic properties similar to that of caspase 1, which is a cysteine protease that mediates the programmed cell death (PCD) pathway in animals. Although there is limited sequence identity between VPE and caspase 1, their predicted three-dimensional structures revealed that the essential amino-acid residues for these enzymes form similar pockets for the substrate peptide YVAD. In contrast to the cytosolic localization of caspases, VPE is localized in vacuoles. VPE provokes vacuolar rupture, initiating the proteolytic cascade leading to PCD in the plant immune response. It has become apparent that the VPE-dependent PCD pathway is involved not only in the immune response, but also in the responses to a variety of stress inducers and in the development of various tissues. This review summarizes the current knowledge on the contribution of VPE to plant PCD and its role in vacuole-mediated cell death, and it also compares VPE with the animal cell death executor caspase 1.

Indexed as

asparaginyl endopeptidase (AEP)caspase 1hypersensitive cell deathlegumainprogrammed cell deathsenescencevacuolar collapsevacuolar processing enzyme (VPE)

Identifiers

PMID25914711
PMCPMC4390986
OpenAlexW2083684362

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.