Evidence map›Paper›PMID 25914596›Full record

ArticleBreeding science2014

Development and validation of DNA markers linked to Sdvy-1, a common bean gene conferring resistance to the yellowing strain of Soybean dwarf virus.

Yoko Yamashita, Toru Takeuchi, Masataka Okuyama, Jun Sasaki, Kakumasa Onodera, Mikako Sato, Chihiro Souma, Shigehiko Ebe

Abstract read
In one paragraph

Article in Breeding science, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yoko YamashitaHokkaido Research Organization (HRO) Central Agricultural Experiment Station (AES) , Higashi 6 Kita 15, Naganuma, Hokkaido 069-1395 , Japan.
Toru TakeuchiHokkaido Research Organization (HRO) Central Agricultural Experiment Station (AES) , Higashi 6 Kita 15, Naganuma, Hokkaido 069-1395 , Japan.
Masataka OkuyamaHRO Kitami AES , 52 Yayoi, Kunneppu, Hokkaido 099-1496 , Japan.
Jun SasakiHRO Kitami AES , 52 Yayoi, Kunneppu, Hokkaido 099-1496 , Japan.
Kakumasa OnoderaHRO Kitami AES , 52 Yayoi, Kunneppu, Hokkaido 099-1496 , Japan.
Mikako SatoHokkaido Research Organization (HRO) Central Agricultural Experiment Station (AES) , Higashi 6 Kita 15, Naganuma, Hokkaido 069-1395 , Japan.
Chihiro SoumaHokkaido Research Organization (HRO) Central Agricultural Experiment Station (AES) , Higashi 6 Kita 15, Naganuma, Hokkaido 069-1395 , Japan.
Shigehiko EbeHRO Tokachi AES , S9-2 Shinsei, Memuro, Hokkaido 082-0071 , Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The yellowing strain of Soybean dwarf virus (SbDV-YS) causes yellowing and yield loss in common bean (Phaseolus vulgaris). The most effective control is achieved through breeding for resistance. An indeterminate climbing cultivar with a white seed coat, 'Oofuku', is resistant to SbDV-YS in inoculation tests. We crossed 'Oofuku' with an elite cultivar, 'Taisho-Kintoki', which is SbDV-YS-susceptible, determinate dwarf with a red-purple seed coat, and performed amplified-fragment-length polymorphism analysis of F3 lines. From nucleotide sequences of the resistant-specific fragments and their flanking regions, we developed five DNA markers, of which DV86, DV386, and DV398 were closely linked to Sdvy-1, a resistance gene. Using the markers, we developed 'Toiku-B79' and 'Toiku-B80', the near-isogenic lines (NILs) incorporating Sdvy-1 in the background of 'Taisho-Kintoki'. The NILs had similar growth habit, maturity date and seed shape to those of 'Taisho-Kintoki'. The quality of boiled beans was also similar, except that the NILs had more seed coat cracking than 'Taisho-Kintoki'. The NILs showed no SbDV-YS infection in inoculation tests. We suggest that Sdvy-1 is a useful source of SbDV-YS resistance in common bean.

Indexed as

AFLPdisease resistancekidney beanPhaseolus vulgarisSCAR markerseed coat color

Identifiers

PMID25914596
PMCPMC4267316

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.