Evidence map›Paper›PMID 25914058›Full record

ArticleStructure (London, England : 1993)2015

The ssDNA Mutator APOBEC3A Is Regulated by Cooperative Dimerization.

Markus-Frederik Bohn, Shivender M D Shandilya, Tania V Silvas, Ellen A Nalivaika, Takahide Kouno, Brian A Kelch, Sean P Ryder, Nese Kurt-Yilmaz, Mohan Somasundaran, Celia A Schiffer

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 91 citations in OpenAlex.

  1. Article
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  4. Review
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  8. Review
  9. Review
  10. APOBEC3A regulates transcription from interferon-stimulated response elements.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  11. The current toolbox for APOBEC drug discovery.Trends in pharmacological sciences · 2022
    Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. APOBEC3A catalyzes mutation and drives carcinogenesis in vivo.The Journal of experimental medicine · 2020
    Article
  20. Review

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Markus-Frederik BohnDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School Worcester, 364 Plantation Street, MA 01605, USA.
Shivender M D ShandilyaDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School Worcester, 364 Plantation Street, MA 01605, USA.
Tania V SilvasDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School Worcester, 364 Plantation Street, MA 01605, USA.
Ellen A NalivaikaDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School Worcester, 364 Plantation Street, MA 01605, USA.
Takahide KounoDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School Worcester, 364 Plantation Street, MA 01605, USA; Department of Biochemistry, Molecular Biology and Biophysics, Institute for Molecular Virology, University of Minnesota, Minneapolis, MN 55455, USA.
Brian A KelchDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School Worcester, 364 Plantation Street, MA 01605, USA.
Sean P RyderDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School Worcester, 364 Plantation Street, MA 01605, USA.
Nese Kurt-YilmazDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School Worcester, 364 Plantation Street, MA 01605, USA.
Mohan SomasundaranDepartment of Pediatrics and Program in Molecular Medicine, University of Massachusetts Medical School Worcester, MA 01605, USA.
Celia A SchifferDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School Worcester, 364 Plantation Street, MA 01605, USA. Electronic address: celia.schiffer@umassmed.edu.
University of Massachusetts Chan Medical School · USUniversity of Minnesota · US

Funding

Structural Characterization of APOBECS's Atomic interactionsP01GM091743 · NIGMS · UNIVERSITY OF MINNESOTA · PI KOTLER, MOSHE · 2011 to 2015
$10.1M
NIGMS NIH HHS P01 GM091743NIGMS NIH HHS P01 GM091743-03S1
6 · The paper itself

Abstract

Deaminase activity mediated by the human APOBEC3 family of proteins contributes to genomic instability and cancer. APOBEC3A is by far the most active in this family and can cause rapid cell death when overexpressed, but in general how the activity of APOBEC3s is regulated on a molecular level is unclear. In this study, the biochemical and structural basis of APOBEC3A substrate binding and specificity is elucidated. We find that specific binding of single-stranded DNA is regulated by the cooperative dimerization of APOBEC3A. The crystal structure elucidates this homodimer as a symmetric domain swap of the N-terminal residues. This dimer interface provides insights into how cooperative protein-protein interactions may affect function in the APOBEC3 enzymes and provides a potential scaffold for strategies aimed at reducing their mutation load.

Indexed as

Binding SitesCrystallography, X-RayCytidine DeaminaseDimerizationDNA, Single-StrandedHumansModels, MolecularMutationProtein BindingProteinsProtein Structure, SecondaryProtein Structure, TertiarySubstrate SpecificityZincAPOBEC3A protein, humanCytidine DeaminaseDNA, Single-StrandedProteinsZinc

Identifiers

PMID25914058
PMCPMC4874493
OpenAlexW2067211077

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.