Evidence map›Paper›PMID 25913708›Full record

ArticleMarine drugs2015

UPLC-MSE profiling of Phytoplankton metabolites: application to the identification of pigments and structural analysis of metabolites in Porphyridium purpureum.

Camille Juin, Antoine Bonnet, Elodie Nicolau, Jean-Baptiste Bérard, Romain Devillers, Valérie Thiéry, Jean-Paul Cadoret, Laurent Picot

Open access · goldAbstract read
In one paragraph

Article in Marine drugs, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Review
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  6. Review
  7. Article
  8. Article
  9. Article
  10. Fast Profiling of Natural Pigments in DifferentMolecules (Basel, Switzerland) · 2018
    Article
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  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Camille JuinUniversity of La Rochelle, UMRi CNRS 7266 LIENSs, 17042 La Rochelle, France. camille.juin@univ-lr.fr.
Antoine BonnetPlatform for the High Resolution Analysis of Biomolecules, University of La Rochelle, UMRi CNRS 7266 LIENSs, 17042 La Rochelle, France. antoine.bonnet@univ-lr.fr.
Elodie NicolauIFREMER, Laboratory BRM/PBA, Rue de l'Ile d'Yeu, 44311 Nantes, France. elodie.nicolau@ifremer.fr.
Jean-Baptiste BérardIFREMER, Laboratory BRM/PBA, Rue de l'Ile d'Yeu, 44311 Nantes, France. jean.baptiste.berard@ifremer.fr.
Romain DevillersUniversity of La Rochelle, UMRi CNRS 7266 LIENSs, 17042 La Rochelle, France. romain.devillers@etudiant.univ-lr.fr.
Valérie ThiéryUniversity of La Rochelle, UMRi CNRS 7266 LIENSs, 17042 La Rochelle, France. valerie.thiery@univ-lr.fr.
Jean-Paul CadoretIFREMER, Laboratory BRM/PBA, Rue de l'Ile d'Yeu, 44311 Nantes, France. jean.paul.cadoret@ifremer.fr.
Laurent PicotUniversity of La Rochelle, UMRi CNRS 7266 LIENSs, 17042 La Rochelle, France. lpicot@univ-lr.fr.
Centre National de la Recherche Scientifique · FRIfremer · FRLa Rochelle Université · FRLaboratoire Physiologie Biotechnologie des Algues · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A fast and high-resolution UPLC-MSE analysis was used to identify phytoplankton pigments in an ethanol extract of Porphyridium purpureum (Pp) devoid of phycobiliproteins. In a first step, 22 standard pigments were analyzed by UPLC-MSE to build a database including retention time and accurate masses of parent and fragment ions. Using this database, seven pigments or derivatives previously reported in Pp were unequivocally identified: β,β-carotene, chlorophyll a, zeaxanthin, chlorophyllide a, pheophorbide a, pheophytin a, and cryptoxanthin. Minor amounts of Divinyl chlorophyll a, a chemotaxonomic pigment marker for prochlorophytes, were also unequivocally identified using the database. Additional analysis of ionization and fragmentation patterns indicated the presence of ions that could correspond to hydroxylated derivatives of chlorophyll a and pheophytin a, produced during the ethanolic extraction, as well as previously described galactosyldiacylglycerols, the thylakoid coenzyme plastoquinone, and gracilamide B, a molecule previously reported in the red seaweed Gracillaria asiatica. These data point to UPLC-MSE as an efficient technique to identify phytoplankton pigments for which standards are available, and demonstrate its major interest as a complementary method for the structural elucidation of ionizable marine molecules.

Indexed as

BiomarkersChromatography, High Pressure LiquidCyclopropanesDatabases, ChemicalDrug DiscoveryGalactolipidsHydroxylationMetabolomicsMicroalgaeMolecular StructureMolecular WeightPhotobioreactorsPhytoplanktonPigments, BiologicalPlant ExtractsPlastoquinoneBiomarkersCyclopropanesdiacylgalactosylglycerolGalactolipidsgracilamide BPigments, BiologicalPlant ExtractsPlastoquinone

Identifiers

PMID25913708
PMCPMC4413225
OpenAlexW1977632663

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.