Evidence map›Paper›PMID 25912819›Full record

ArticleMicrobial biotechnology2015

Knockout of the adp gene related with colonization in Bacillus nematocida B16 using customized transcription activator-like effectors nucleases.

Qiuhong Niu, Haoying Zheng, Lin Zhang, Fujun Qin, Loryn Facemire, Guo Zhang, Feng Cao, Ke-Qin Zhang, Xiaowei Huang, Jianwei Yang and 2 more

Open access · goldAbstract read
In one paragraph

Article in Microbial biotechnology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Pathogens (Basel, Switzerland) · 2022
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Qiuhong NiuDepartment of Life Science and Biotechnology, Nanyang Normal University, Nanyang, Henan, 473061, China.
Haoying ZhengDepartment of Life Science and Biotechnology, Nanyang Normal University, Nanyang, Henan, 473061, China.
Lin ZhangDepartment of Life Science and Biotechnology, Nanyang Normal University, Nanyang, Henan, 473061, China.
Fujun QinDepartment of Pathology, School of Medicine, University of Virginia, Charlottesville, VA, 22908, USA.
Loryn FacemireDepartment of Pathology, School of Medicine, University of Virginia, Charlottesville, VA, 22908, USA.
Guo ZhangDepartment of Life Science and Biotechnology, Nanyang Normal University, Nanyang, Henan, 473061, China.
Feng CaoDepartment of Life Science and Biotechnology, Nanyang Normal University, Nanyang, Henan, 473061, China.
Ke-Qin ZhangLaboratory for Conservation and Utilization of Bio-Resources, Key Laboratory for Microbial Resources of the Ministry of Education, Yunnan University, Kunming, 650091, China.
Xiaowei HuangLaboratory for Conservation and Utilization of Bio-Resources, Key Laboratory for Microbial Resources of the Ministry of Education, Yunnan University, Kunming, 650091, China.
Jianwei YangDepartment of Life Science and Biotechnology, Nanyang Normal University, Nanyang, Henan, 473061, China.
Lei HeDepartment of Life Science and Biotechnology, Nanyang Normal University, Nanyang, Henan, 473061, China.
Chanjuan LiuDepartment of Life Science and Biotechnology, Nanyang Normal University, Nanyang, Henan, 473061, China.
Nanyang Normal University · CNUniversity of Virginia · USYunnan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacillus nematocida B16 is able to dominate in the intestines of the worm Caenorhabditis elegans in 'Trojan horse' pathogenic mechanism. The adp is one candidate gene which potentially play a vital role in the colonization from our previous random mutagenesis screening results. To analyse the functional role of this gene, we constructed the adp knockout mutant through customized transcription activator-like effectors nucleases (TALEN), which has been successfully used in yeasts, nematodes, zebrafish and human pluripotent cells. Here, we first time report this knockout method in bacteria on this paper. Bioassay experiments demonstrated that the adp knockout mutant of B16 showed considerably lower colonization activity, reduced numbers of intestines and less than 80% nematocidal activity compared with the wild-type strain when infected for 48 h. However, no obvious change on proteolytic activity was observed in the mutant. Conversely, the complementation of adp gene restored most of the above deficient phenotypes. These results indicated that the adp gene was involved in surface adhesion and played a comparatively important role in colonizing host nematodes. Moreover, TALENs successfully disrupt target genes in bacteria.

Indexed as

Adhesins, BacterialAnimalsBacillusCaenorhabditis elegansGastrointestinal TractGene Knockout TechniquesGenetic Complementation TestSurvival AnalysisVirulence FactorsAdhesins, BacterialVirulence Factors

Identifiers

PMID25912819
PMCPMC4476823
OpenAlexW1599736469

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.