Evidence map›Paper›PMID 25911746›Full record

ArticleJournal of experimental botany2015

Functionally different PIN proteins control auxin flux during bulbil development in Agave tequilana.

María Jazmín Abraham Juárez, Rocío Hernández Cárdenas, José Natzul Santoyo Villa, Devin O'Connor, Aaron Sluis, Sarah Hake, José Ordaz-Ortiz, Leon Terry, June Simpson

Open access · greenAbstract read
In one paragraph

Article in Journal of experimental botany, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
5.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 47 citations in OpenAlex.

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  10. Cytokinin Type-B Response Regulators Promote Bulbil Initiation inInternational journal of molecular sciences · 2021
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  12. Mode of Action ofInternational journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

María Jazmín Abraham JuárezDepartment of Plant Genetic Engineering, Cinvestav Irapuato, Km. 9.6 Libramiento Norte Carretera Irapuato-León, Apdo. Postal 629, 36821 Irapuato, Guanajuato, Mexico.
Rocío Hernández CárdenasDepartment of Plant Genetic Engineering, Cinvestav Irapuato, Km. 9.6 Libramiento Norte Carretera Irapuato-León, Apdo. Postal 629, 36821 Irapuato, Guanajuato, Mexico.
José Natzul Santoyo VillaDepartment of Plant Genetic Engineering, Cinvestav Irapuato, Km. 9.6 Libramiento Norte Carretera Irapuato-León, Apdo. Postal 629, 36821 Irapuato, Guanajuato, Mexico.
Devin O'ConnorSainsbury Laboratory, Cambridge University, 47 Bateman Street, Cambridge CB2 1LR, UK.
Aaron SluisPlant Gene Expression Center, US Department of Agriculture-Agricultural Research Service, Plant and Microbial Biology Department, University of California at Berkeley, Berkeley, CA 94720, USA.
Sarah HakePlant Gene Expression Center, US Department of Agriculture-Agricultural Research Service, Plant and Microbial Biology Department, University of California at Berkeley, Berkeley, CA 94720, USA.
José Ordaz-OrtizPlant Science Laboratory, Cranfield University, Bedfordshire MK43 0AL, UK.
Leon TerryPlant Science Laboratory, Cranfield University, Bedfordshire MK43 0AL, UK.
June SimpsonDepartment of Plant Genetic Engineering, Cinvestav Irapuato, Km. 9.6 Libramiento Norte Carretera Irapuato-León, Apdo. Postal 629, 36821 Irapuato, Guanajuato, Mexico jsimpson@ira.cinvestav.mx.
Instituto Tecnológico Superior de Irapuato · MXCranfield University · GBPlant Gene Expression Center · USSainsbury Laboratory · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In Agave tequilana, reproductive failure or inadequate flower development stimulates the formation of vegetative bulbils at the bracteoles, ensuring survival in a hostile environment. Little is known about the signals that trigger this probably unique phenomenon in agave species. Here we report that auxin plays a central role in bulbil development and show that the localization of PIN1-related proteins is consistent with altered auxin transport during this process. Analysis of agave transcriptome data led to the identification of the A. tequilana orthologue of PIN1 (denoted AtqPIN1) and a second closely related gene from a distinct clade reported as 'Sister of PIN1' (denoted AtqSoPIN1). Quantitative real-time reverse transcription-PCR (RT-qPCR) analysis showed different patterns of expression for each gene during bulbil formation, and heterologous expression of the A. tequilana PIN1 and SoPIN1 genes in Arabidopsis thaliana confirmed functional differences between these genes. Although no free auxin was detected in induced pedicel samples, changes in the levels of auxin precursors were observed. Taken as a whole, the data support the model that AtqPIN1 and AtqSoPIN1 have co-ordinated but distinct functions in relation to auxin transport during the initial stages of bulbil formation.

Indexed as

AgaveArabidopsisBiological TransportDNA, ComplementaryFlowersGene Expression Regulation, PlantGenes, PlantIndoleacetic AcidsModels, BiologicalMolecular Sequence DataPhylogenyPlant ProteinsPlants, Genetically ModifiedReal-Time Polymerase Chain ReactionDNA, ComplementaryIndoleacetic AcidsPlant ProteinsAgave tequilanaauxin fluxbulbildevelopmentgene expressionimmunolocalizationPIN proteins.

Identifiers

PMID25911746
PMCPMC4473989
OpenAlexW2098187522

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.