Evidence map›Paper›PMID 25911230›Full record

ArticleMolecular biology and evolution2015

Tracing the Evolutionary History of Inositol, 1, 4, 5-Trisphosphate Receptor: Insights from Analyses of Capsaspora owczarzaki Ca2+ Release Channel Orthologs.

Kamil J Alzayady, Arnau Sebé-Pedrós, Rahul Chandrasekhar, Liwei Wang, Iñaki Ruiz-Trillo, David I Yule

Open access · bronzeAbstract read
In one paragraph

Article in Molecular biology and evolution, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Functional determination of calcium-binding sites required for the activation of inositol 1,4,5-trisphosphate receptors.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  6. Article
  7. Quantal CaCell reports · 2021
    Article
  8. Review
  9. Article
  10. Origins of eukaryotic excitability.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Review
  11. Article
  12. Article
  13. The acidocalcisome inositol-1,4,5-trisphosphate receptor ofThe Journal of biological chemistry · 2019
    Article
  14. Structure and Function of IPCold Spring Harbor perspectives in biology · 2019
    Review
  15. Differential regulation of ion channels function by proteolysis.Biochimica et biophysica acta. Molecular cell research · 2018
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Kamil J AlzayadyDepartment of Pharmacology and Physiology, University of Rochester.
Arnau Sebé-PedrósInstitut de Biologia Evolutiva, Universitat Pompeu Fabra-CSIC, Barcelona, Catalonia, Spain arnau.sebe@ibe.upf-csic.es david_yule@urmc.rochester.edu.
Rahul ChandrasekharDepartment of Pharmacology and Physiology, University of Rochester.
Liwei WangDepartment of Pharmacology and Physiology, University of Rochester.
Iñaki Ruiz-TrilloInstitut de Biologia Evolutiva, Universitat Pompeu Fabra-CSIC, Barcelona, Catalonia, Spain Departament de Genètica, Universitat de Barcelona, Barcelona, Catalonia, Spain Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Catalonia, Spain.
David I YuleDepartment of Pharmacology and Physiology, University of Rochester arnau.sebe@ibe.upf-csic.es david_yule@urmc.rochester.edu.
University of Rochester · USInstitució Catalana de Recerca i Estudis Avançats · ESPompeu Fabra University · ES

Funding

[Ca2+]i and Secretory Dynamics in Parotid Acinar CellsR01DE014756 · NIDCR · UNIVERSITY OF ROCHESTER · PI David I Yule · 2002 to 2026
$9.9M
An experimental/computational approach for understanding salivary fluid secretionR01DE019245 · NIDCR · UNIVERSITY OF ROCHESTER · PI David I Yule · 2008 to 2026
$9.7M
Training Program in Oral ScienceT90DE021985 · NIDCR · UNIVERSITY OF ROCHESTER · PI OVITT, CATHERINE, YULE, DAVID I · 2011 to 2021
$5.6M
European Research Council 616960NIDCR NIH HHS R01 DE014756NIDCR NIH HHS R01 DE019245NIDCR NIH HHS R01-DE14756NIDCR NIH HHS R01-DE19245NIDCR NIH HHS T90 DE021985
6 · The paper itself

Abstract

Cellular Ca(2+) homeostasis is tightly regulated and is pivotal to life. Inositol 1,4,5-trisphosphate receptors (IP3Rs) and ryanodine receptors (RyRs) are the major ion channels that regulate Ca(2+) release from intracellular stores. Although these channels have been extensively investigated in multicellular organisms, an appreciation of their evolution and the biology of orthologs in unicellular organisms is largely lacking. Extensive phylogenetic analyses reveal that the IP3R gene superfamily is ancient and diverged into two subfamilies, IP3R-A and IP3R-B/RyR, at the dawn of Opisthokonta. IP3R-B/RyR further diversified into IP3R-B and RyR at the stem of Filozoa. Subsequent evolution and speciation of Holozoa is associated with duplication of IP3R-A and RyR genes, and loss of IP3R-B in the vertebrate lineages. To gain insight into the properties of IP3R important for the challenges of multicellularity, the IP3R-A and IP3R-B family orthologs were cloned from Capsaspora owczarzaki, a close unicellular relative to Metazoa (designated as CO.IP3R-A and CO.IP3R-B). Both proteins were targeted to the endoplasmic reticulum. However, CO.IP3R-A, but strikingly not CO.IP3R-B, bound IP3, exhibited robust Ca(2+) release activity and associated with mammalian IP3Rs. These data indicate strongly that CO.IP3R-A as an exemplar of ancestral IP3R-A orthologs forms bona fide IP3-gated channels. Notably, however, CO.IP3R-A appears not to be regulated by Ca(2+), ATP or Protein kinase A-phosphorylation. Collectively, our findings explore the origin, conservation, and diversification of IP3R gene families and provide insight into the functionality of ancestral IP3Rs and the added specialization of these proteins in Metazoa.

Indexed as

Adenosine TriphosphateBacterial ProteinsCalcium SignalingEvolution, MolecularGene ExpressionInositol 1,4,5-Trisphosphate ReceptorsMycoplasmaPhylogenyAdenosine TriphosphateBacterial ProteinsInositol 1,4,5-Trisphosphate Receptors45-trisphosphate receptorcalcium release channelsCapsaspora owczarzakiinositol 1

Identifiers

PMID25911230
PMCPMC4540961
OpenAlexW2133670086

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.