Evidence map›Paper›PMID 25911227›Full record

ArticleG3 (Bethesda, Md.)2015

Transcriptional Response to Acute Thermal Exposure in Juvenile Chinook Salmon Determined by RNAseq.

Katharine M H Tomalty, Mariah H Meek, Molly R Stephens, Gonzalo Rincón, Nann A Fangue, Bernie P May, Melinda R Baerwald

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
6.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 83 citations in OpenAlex.

  1. Article
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  13. Transcriptomic Response of the Liver Tissue inAnimals : an open access journal from MDPI · 2023
    Article
  14. Article
  15. Zoological research · 2023
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Katharine M H TomaltyDepartment of Animal Science, University of California, Davis, California 95616 kmtomalty@ucdavis.edu.
Mariah H MeekDepartment of Animal Science, University of California, Davis, California 95616.
Molly R StephensDepartment of Animal Science, University of California, Davis, California 95616.
Gonzalo RincónDepartment of Animal Science, University of California, Davis, California 95616.
Nann A FangueDepartment of Wildlife, Fish, and Conservation Biology, University of California, Davis, California 95616.
Bernie P MayDepartment of Animal Science, University of California, Davis, California 95616.
Melinda R BaerwaldDepartment of Animal Science, University of California, Davis, California 95616.
University of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thermal exposure is a serious and growing challenge facing fish species worldwide. Chinook salmon (Oncorhynchus tshawytscha) living in the southern portion of their native range are particularly likely to encounter warmer water due to a confluence of factors. River alterations have increased the likelihood that juveniles will be exposed to warm water temperatures during their freshwater life stage, which can negatively impact survival, growth, and development and pose a threat to dwindling salmon populations. To better understand how acute thermal exposure affects the biology of salmon, we performed a transcriptional analysis of gill tissue from Chinook salmon juveniles reared at 12° and exposed acutely to water temperatures ranging from ideal to potentially lethal (12° to 25°). Reverse-transcribed RNA libraries were sequenced on the Illumina HiSeq2000 platform and a de novo reference transcriptome was created. Differentially expressed transcripts were annotated using Blast2GO and relevant gene clusters were identified. In addition to a high degree of downregulation of a wide range of genes, we found upregulation of genes involved in protein folding/rescue, protein degradation, cell death, oxidative stress, metabolism, inflammation/immunity, transcription/translation, ion transport, cell cycle/growth, cell signaling, cellular trafficking, and structure/cytoskeleton. These results demonstrate the complex multi-modal cellular response to thermal stress in juvenile salmon.

Indexed as

TranscriptomeAnimalsDown-RegulationFish ProteinsGillsProtein DenaturationRNASalmonSequence Analysis, RNATemperatureUp-RegulationFish ProteinsRNAgene discoveryIlluminaOncorhynchus tshawytschathermal tolerance

Identifiers

PMID25911227
PMCPMC4502368
OpenAlexW2168313721

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.