Evidence map›Paper›PMID 25910242›Full record

ArticleChemistry & biology2015

The structure of the PanD/PanZ protein complex reveals negative feedback regulation of pantothenate biosynthesis by coenzyme A.

Diana C F Monteiro, Vijay Patel, Christopher P Bartlett, Shingo Nozaki, Thomas D Grant, James A Gowdy, Gary S Thompson, Arnout P Kalverda, Edward H Snell, Hironori Niki and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Chemistry & biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 38 citations in OpenAlex.

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  10. Homogeneous batch micro-crystallization of proteins from ammonium sulfate.Acta crystallographica. Section D, Structural biology · 2021
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  11. The Desotamide Family of Antibiotics.Antibiotics (Basel, Switzerland) · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Diana C F MonteiroAstbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, UK; School of Chemistry, University of Leeds, Leeds LS2 9JT, UK; Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK.
Vijay PatelAstbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, UK; Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK.
Christopher P BartlettAstbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, UK; Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK.
Shingo NozakiMicrobial Genetics Laboratory, Genetic Strains Research Center, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka 411-8540, Japan.
Thomas D GrantHauptmann-Woodward Medical Research Institute, Buffalo, NY 14203, USA.
James A GowdyAstbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, UK; School of Chemistry, University of Leeds, Leeds LS2 9JT, UK; Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK.
Gary S ThompsonAstbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, UK; Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK.
Arnout P KalverdaAstbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, UK; Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK.
Edward H SnellHauptmann-Woodward Medical Research Institute, Buffalo, NY 14203, USA.
Hironori NikiMicrobial Genetics Laboratory, Genetic Strains Research Center, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka 411-8540, Japan; Department of Genetics, Graduate University for Advanced Studies (Sokendai), 1111 Yata, Mishima, Shizuoka 411-8540, Japan.
Arwen R PearsonAstbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, UK; Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK. Electronic address: arwen.pearson@cfel.de.
Michael E WebbAstbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, UK; School of Chemistry, University of Leeds, Leeds LS2 9JT, UK. Electronic address: m.e.webb@leeds.ac.uk.
Hauptman-Woodward Medical Research Institute · USNational Institute of Genetics · JP

Funding

Biotechnology and Biological Sciences Research Council BB/I025247/1Wellcome TrustWellcome Trust 093792/Z/10/ZWellcome Trust 094232/Z/10/ZWellcome Trust 096684/Z/11/ZWellcome Trust 099759/Z/12/Z
6 · The paper itself

Abstract

Coenzyme A (CoA) is an ubiquitous and essential cofactor, synthesized from the precursor pantothenate. Vitamin biosynthetic pathways are normally tightly regulated, including the pathway from pantothenate to CoA. However, no regulation of pantothenate biosynthesis has been identified. We have recently described an additional component in the pantothenate biosynthetic pathway, PanZ, which promotes the activation of the zymogen, PanD, to form aspartate α-decarboxylase (ADC) in a CoA-dependent manner. Here we report the structure of PanZ in complex with PanD, which reveals the structural basis for the CoA dependence of this interaction and activation. In addition, we show that PanZ acts as a CoA-dependent inhibitor of ADC catalysis. This inhibitory effect can effectively regulate the biosynthetic pathway to pantothenate, and thereby also regulate CoA biosynthesis. This represents a previously unobserved mode of metabolic regulation whereby a cofactor-utilizing protein negatively regulates the biosynthesis of the same cofactor.

Indexed as

Amino Acid SequenceBiocatalysisCoenzyme AGlutamate DecarboxylaseMagnetic Resonance SpectroscopyMolecular Dynamics SimulationMolecular Sequence DataMutagenesisPantothenic AcidProtein BindingProtein Interaction Domains and MotifsScattering, Small AngleSequence AlignmentX-Ray Diffractionaspartate-alpha-decarboxylaseCoenzyme AGlutamate DecarboxylasePantothenic Acid

Identifiers

PMID25910242
PMCPMC4410942
OpenAlexW2007152154

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.