ArticlePloS one2015
Evolutionary Comparison of Two Combinatorial Regulators of SBP-Box Genes, MiR156 and MiR529, in Plants.
Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed, 33 citations in OpenAlex.
- Miniature Inverted-Repeat Transposable Elements: Small DNA Transposons That Have Contributed to PlantPlants (Basel, Switzerland) · 2023Review
- The Regulation of Plant Vegetative Phase Transition and Rejuvenation: miRNAs, a Key Regulator.Epigenomes · 2021Review
- Distinct Evolutionary Profiles and Functions of microRNA156 and microRNA529 in Land Plants.International journal of molecular sciences · 2021Article
- MicroRNA156-mediated changes in leaf composition lead to altered photosynthetic traits during vegetative phase change.The New phytologist · 2021Article
- Pan-Genome miRNomics inPlants (Basel, Switzerland) · 2021Article
- Effect of Arsenic Stress on Expression Pattern of a Rice SpecificFrontiers in plant science · 2020Article
- Characterization on the conservation and diversification of miRNA156 gene family from lower to higher plant species based on phylogenetic analysis at the whole genomic level.Functional & integrative genomics · 2019Article
- Genome-wide analysis of long non-coding RNAs in Catalpa bungei and their potential function in floral transition using high-throughput sequencing.BMC genetics · 2018Article
- Genome-wide association study dissects yield components associated with low-phosphorus stress tolerance in maize.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
- Comprehensive survey and evolutionary analysis of genome-wide miRNA genes from ten diploid Oryza species.BMC genomics · 2017Article
- Overexpression of miR529a confers enhanced resistance to oxidative stress in rice (Oryza sativa L.).Plant cell reports · 2017Article
- MiR529a modulates panicle architecture through regulating SQUAMOSA PROMOTER BINDING-LIKE genes in rice (Oryza sativa).Plant molecular biology · 2017Article
- An Optimized Transient Dual Luciferase Assay for Quantifying MicroRNA Directed Repression of Targeted Sequences.Frontiers in plant science · 2017Article
- Article
- Functional and evolutionary analyses of the miR156 and miR529 families in land plants.BMC plant biology · 2016Article
- Evolution and divergence of SBP-box genes in land plants.BMC genomics · 2015Article
Corrections and comments
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Authors and funding
5 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
A complete picture of the evolution of miRNA combinatorial regulation requires the synthesis of information on all miRNAs and their targets. MiR156 and miR529 are two combinatorial regulators of squamosa promoter binding protein-like (SBP-box) genes. Previous studies have clarified the evolutionary dynamics of their targets; however, there have been no reports on the evolutionary patterns of two miRNA regulators themselves to date. In this study, we investigated the evolutionary differences between these two miRNA families in extant land plants. Our work found that miR529 precursor, especially of its mature miRNA sequence, has a higher evolutionary rate. Such accelerating evolution of miR529 has significantly effects on its structural stability, and sequence conservation against existence of itself. By contrast, miR156 evolves more rapidly in loop region of the stable secondary structure, which may contribute to its functional diversity. Moreover, miR156 and miR529 genes have distinct rates of loss after identical duplication events. MiR529 genes have a higher average loss rate and asymmetric loss rate in duplicated gene pairs, indicating preferred miR529 gene losses become another predominant mode of inactivation, that are implicated in the contraction of this family. On the contrary, duplicated miR156 genes have a low loss rate, and could serve as another new source for functional diversity. Taken together, these results provide better insight into understanding the evolutionary divergence of miR156 and miR529 family in miRNA combinational regulation network.
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