Evidence map›Paper›PMID 25908824›Full record

ArticleScience (New York, N.Y.)2015

Ribosome. Mechanical force releases nascent chain-mediated ribosome arrest in vitro and in vivo.

Daniel H Goldman, Christian M Kaiser, Anthony Milin, Maurizio Righini, Ignacio Tinoco, Carlos Bustamante

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 132 papers.

0numbers the graph read from it
0cells of the map it votes in
132citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

132 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Calmodulin assists during co-translational folding of the KProtein science : a publication of the Protein Society · 2026
    Article
  9. Article
  10. SARS-CoV-2 membrane protein biogenesis.bioRxiv : the preprint server for biology · 2026
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Trigger factor accelerates nascent chain compaction and folding.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  16. Article
  17. Article
  18. Review
  19. Cotranslational membrane insertion of the voltage-sensitive KProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  20. Review

72 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Daniel H GoldmanDepartment of Chemistry, University of California, Berkeley, CA 94720, USA.
Christian M KaiserInstitute for Quantitative Biosciences (QB3), University of California, Berkeley, CA 94720, USA. Department of Biology, Johns Hopkins University, Baltimore, MD 21218, USA. carlos@alice.berkeley.edu kaiser@jhu.edu.
Anthony MilinDepartment of Chemistry, University of California, Berkeley, CA 94720, USA. Department of Biology, Johns Hopkins University, Baltimore, MD 21218, USA.
Maurizio RighiniInstitute for Quantitative Biosciences (QB3), University of California, Berkeley, CA 94720, USA.
Ignacio TinocoDepartment of Chemistry, University of California, Berkeley, CA 94720, USA.
Carlos BustamanteDepartment of Chemistry, University of California, Berkeley, CA 94720, USA. Institute for Quantitative Biosciences (QB3), University of California, Berkeley, CA 94720, USA. Department of Physics, University of California, Berkeley, CA 94720, USA. Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA. Kavli Energy Nanosciences Institute at Berkeley, Berkeley, CA 94720, USA. Howard Hughes Medical Institute, University of California, Berkeley, CA 94720, USA. carlos@alice.berkeley.edu kaiser@jhu.edu.

Funding

STRUCTURE AND FUNCTION OF NUCLEIC ACIDSR01GM010840 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI TINOCO, IGNACIO · 1985 to 2015
$7.1M
THE PHYSICAL CHEMISTRY OF NUCLEIC ACIDSR01GM032543 · NIGMS · UNIVERSITY OF OREGON · PI CARLOS Jose BUSTAMANTE · 1985 to 2026
$6.4M
Single molecule analysis of nascent protein foldingK99GM086516 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI KAISER, CHRISTIAN · 2009 to 2010
$179k
STRUCTURE/FUNCTION OF NUCLEIC ACIDSR37GM010840 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI TINOCO, IGNACIO · 1990 to 1999
–
Howard Hughes Medical InstituteNIGMS NIH HHS 5K99GM086516NIGMS NIH HHS 5R01GM32543NIGMS NIH HHS GM10840NIGMS NIH HHS K99 GM086516NIGMS NIH HHS R01 GM010840NIGMS NIH HHS R01 GM032543NIGMS NIH HHS R37 GM010840
6 · The paper itself

Abstract

Protein synthesis rates can affect gene expression and the folding and activity of the translation product. Interactions between the nascent polypeptide and the ribosome exit tunnel represent one mode of regulating synthesis rates. The SecM protein arrests its own translation, and release of arrest at the translocon has been proposed to occur by mechanical force. Using optical tweezers, we demonstrate that arrest of SecM-stalled ribosomes can indeed be rescued by force alone and that the force needed to release stalling can be generated in vivo by a nascent chain folding near the ribosome tunnel exit. We formulate a kinetic model describing how a protein can regulate its own synthesis by the force generated during folding, tuning ribosome activity to structure acquisition by a nascent polypeptide.

Indexed as

Peptide Chain Elongation, TranslationalProtein FoldingEscherichia coliEscherichia coli ProteinsIn Vitro TechniquesKineticsMechanical PhenomenaOptical TweezersRibosomesTranscription FactorsEscherichia coli ProteinsSecM protein, E coliTranscription Factors

Identifiers

PMID25908824
PMCPMC4618485

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.