Evidence map›Paper›PMID 25906181›Full record

ReviewAutophagy2015

ATG16L1: A multifunctional susceptibility factor in Crohn disease.

Mohammad Salem, Mette Ammitzboell, Kris Nys, Jakob Benedict Seidelin, Ole Haagen Nielsen

Open access · bronzeAbstract readReview
In one paragraph

Review in Autophagy, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed, 1 pooled it
10.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 1 synthesis or guideline pooled it, 136 citations in OpenAlex.

  1. Association between ATG16L1 gene polymorphism and the risk of Crohn's disease.The Journal of international medical research · 2017
    Pooled it
  2. A Developmental Perspective on the Intestinal Microbiota in Crohn's Disease.International journal of molecular sciences · 2026
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  11. MAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
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19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 3 countries.

Mohammad Salema Department of Gastroenterology ; Medical Section; Herlev Hospital; University of Copenhagen ; Copenhagen , Denmark.
Mette Ammitzboell
Kris Nys
Jakob Benedict Seidelin
Ole Haagen Nielsen
Herlev Hospital · DKKU Leuven · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genetic variations in the autophagic pathway influence genetic predispositions to Crohn disease. Autophagy, the major lysosomal pathway for degrading and recycling cytoplasmic material, constitutes an important homeostatic cellular process. Of interest, single-nucleotide polymorphisms in ATG16L1 (autophagy-related 16-like 1 [S. cerevisiae]), a key component in the autophagic response to invading pathogens, have been associated with an increased risk of developing Crohn disease. The most common and well-studied genetic variant of ATG16L1 (rs2241880; leading to a T300A conversion) exhibits a strong association with risk for developing Crohn disease. The rs2241880 variant plays a crucial role in pathogen clearance, resulting in imbalanced cytokine production, and is linked to other biological processes, such as the endoplasmic reticulum stress/unfolded protein response. In this review, we focus on the importance of ATG16L1 and its genetic variant (T300A) within the elementary biological processes linked to Crohn disease.

Indexed as

AnimalsAutophagyAutophagy-Related ProteinsCarrier ProteinsCrohn DiseaseEndoplasmic Reticulum StressGenetic Predisposition to DiseaseHumansPolymorphism, Single NucleotideATG16L1 protein, humanAutophagy-Related ProteinsCarrier ProteinsATG16L1ATG16L1, autophagy-related 16-like 1 (S. cerevisiae)autophagybacterial clearanceBCL2, B-cell CLL/lymphoma 2Crohn diseaseDCs, dendritic cellsendoplasmic reticulum stressER, endoplasmic reticulumGWAS, genome-wide association studiesIBD, inflammatory bowel diseaseMDP, muramyl dipeptideMTOR, mechanistic target of rapamycinNFKB, nuclear factor of kappa light polypeptide gene enhancer in B-cellsNOD2NOD2, nucleotide-binding oligomerization domain containing 2RIPK2, receptor-interacting serine-threonine kinase 2SNP, single-nucleotide polymorphismT300A, threonine-to-alanine substitution at amino acid position 300TNF/TNF-α, tumor necrosis factorUC, ulcerative colitisULK1, unc-51 like autophagy-activating kinase 1XBP1, X-box binding protein 1

Identifiers

PMID25906181
PMCPMC4502774
OpenAlexW1657526898

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.