Evidence map›Paper›PMID 25905461›Full record

ArticlePloS one2015

Structure-guided engineering of molinate hydrolase for the degradation of thiocarbamate pesticides.

José P Leite, Márcia Duarte, Ana M Paiva, Frederico Ferreira-da-Silva, Pedro M Matias, Olga C Nunes, Luís Gales

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.1field-weighted citation impact, top 52% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
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  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

José P LeiteInstituto de Investigação e Inovação em Saúde, Universidade do Porto, Porto, Portugal; IBMC-Instituto de Biologia Molecular e Celular, Universidade do Porto, Porto, Portugal.
Márcia DuarteIBMC-Instituto de Biologia Molecular e Celular, Universidade do Porto, Porto, Portugal; LEPABE-Laboratory for Process Engineering, Environmental, Biotechnology and Energy, Faculdade de Engenharia da Universidade do Porto, Porto, Portugal.
Ana M PaivaLEPABE-Laboratory for Process Engineering, Environmental, Biotechnology and Energy, Faculdade de Engenharia da Universidade do Porto, Porto, Portugal.
Frederico Ferreira-da-SilvaInstituto de Investigação e Inovação em Saúde, Universidade do Porto, Porto, Portugal; IBMC-Instituto de Biologia Molecular e Celular, Universidade do Porto, Porto, Portugal.
Pedro M MatiasInstituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, and IBET, Apartado 12, 2781-901 Oeiras, Portugal.
Olga C NunesLEPABE-Laboratory for Process Engineering, Environmental, Biotechnology and Energy, Faculdade de Engenharia da Universidade do Porto, Porto, Portugal.
Luís GalesInstituto de Investigação e Inovação em Saúde, Universidade do Porto, Porto, Portugal; IBMC-Instituto de Biologia Molecular e Celular, Universidade do Porto, Porto, Portugal; ICBAS-Instituto de Ciências Biomédicas Abel Salazar, Universidade do Porto, Porto, Portugal.
Universidade do Porto · PTi3S - Instituto de Investigação e Inovação em Saúde, Universidade do Porto · PTUniversidade Nova de Lisboa · PT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Molinate is a recalcitrant thiocarbamate used to control grass weeds in rice fields. The recently described molinate hydrolase, from Gulosibacter molinativorax ON4T, plays a key role in the only known molinate degradation pathway ending in the formation of innocuous compounds. Here we report the crystal structure of recombinant molinate hydrolase at 2.27 Å. The structure reveals a homotetramer with a single mononuclear metal-dependent active site per monomer. The active site architecture shows similarities with other amidohydrolases and enables us to propose a general acid-base catalysis mechanism for molinate hydrolysis. Molinate hydrolase is unable to degrade bulkier thiocarbamate pesticides such as thiobencarb which is used mostly in rice crops. Using a structural-based approach, we were able to generate a mutant (Arg187Ala) that efficiently degrades thiobencarb. The engineered enzyme is suitable for the development of a broader thiocarbamate bioremediation system.

Indexed as

AmidohydrolasesAzepinesBiodegradation, EnvironmentalCatalytic DomainCrystallography, X-RayHydrolasesHydrolysisOryzaPesticidesThiocarbamatesAmidohydrolasesAzepinesHydrolasesmolinatePesticidesThiocarbamates

Identifiers

PMID25905461
PMCPMC4407906
OpenAlexW2036006226

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.