Evidence map›Paper›PMID 25904919›Full record

ReviewFrontiers in immunology2015

Strategies for B-cell receptor repertoire analysis in primary immunodeficiencies: from severe combined immunodeficiency to common variable immunodeficiency.

Hanna IJspeert, Marjolein Wentink, David van Zessen, Gertjan J Driessen, Virgil A S H Dalm, Martin P van Hagen, Ingrid Pico-Knijnenburg, Erik J Simons, Jacques J M van Dongen, Andrew P Stubbs and 1 more

Open access · goldAbstract readReview
In one paragraph

Review in Frontiers in immunology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Development ofFrontiers in immunology · 2022
    Article
  5. Review
  6. Review
  7. The Pipeline Repertoire for Ig-Seq Analysis.Frontiers in immunology · 2019
    Review
  8. Review
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Hanna IJspeertDepartment of Immunology, Erasmus MC, University Medical Center Rotterdam , Rotterdam , Netherlands.
Marjolein WentinkDepartment of Immunology, Erasmus MC, University Medical Center Rotterdam , Rotterdam , Netherlands.
David van ZessenDepartment of Immunology, Erasmus MC, University Medical Center Rotterdam , Rotterdam , Netherlands ; Department of Bioinformatics, Erasmus MC, University Medical Center Rotterdam , Rotterdam , Netherlands.
Gertjan J DriessenDepartment of Pediatrics, Erasmus MC, University Medical Center Rotterdam , Rotterdam , Netherlands.
Virgil A S H DalmDepartment of Immunology, Erasmus MC, University Medical Center Rotterdam , Rotterdam , Netherlands.
Martin P van HagenDepartment of Immunology, Erasmus MC, University Medical Center Rotterdam , Rotterdam , Netherlands.
Ingrid Pico-KnijnenburgDepartment of Immunology, Erasmus MC, University Medical Center Rotterdam , Rotterdam , Netherlands.
Erik J SimonsDepartment of Immunology, Erasmus MC, University Medical Center Rotterdam , Rotterdam , Netherlands.
Jacques J M van DongenDepartment of Immunology, Erasmus MC, University Medical Center Rotterdam , Rotterdam , Netherlands.
Andrew P StubbsDepartment of Bioinformatics, Erasmus MC, University Medical Center Rotterdam , Rotterdam , Netherlands.
Mirjam van der BurgDepartment of Immunology, Erasmus MC, University Medical Center Rotterdam , Rotterdam , Netherlands.
Erasmus MC · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The antigen receptor repertoires of B- and T-cells form the basis of the adaptive immune response. The repertoires should be sufficiently diverse to recognize all possible pathogens. However, careful selection is needed to prevent responses to self or harmless antigens. Limited antigen receptor repertoire diversity leads to immunodeficiency, whereas unselected or misdirected repertoires can result in autoimmunity. The antigen receptor repertoire harbors information about abnormalities in many immunological disorders. Recent developments in next generation sequencing allow the analysis of the antigen receptor repertoire in much greater detail than ever before. Analyzing the antigen receptor repertoire in patients with mutations in genes responsible for the generation of the antigen receptor repertoire will give new insights into repertoire formation and selection. In this perspective, we describe strategies and considerations for analysis of the naive and antigen-selected B-cell repertoires in primary immunodeficiency patients with a focus on severe combined immunodeficiency and common variable immunodeficiency.

Indexed as

CVIDimmunodeficiencynext generation sequencingrepertoireV(D)J recombination

Identifiers

PMID25904919
PMCPMC4389565
OpenAlexW2075666559

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.