Evidence map›Paper›PMID 25904605›Full record

ArticleThe Journal of infectious diseases2015

Identification of TMPRSS2 as a Susceptibility Gene for Severe 2009 Pandemic A(H1N1) Influenza and A(H7N9) Influenza.

Zhongshan Cheng, Jie Zhou, Kelvin Kai-Wang To, Hin Chu, Cun Li, Dong Wang, Dong Yang, Shufa Zheng, Ke Hao, Yohan Bossé and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 125 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
125citing papers in PubMed, 2 pooled it
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

125 citing papers in PubMed, 2 syntheses or guidelines pooled it, 178 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  4. Review
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  20. Pigs lackingFrontiers in genome editing · 2023
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65 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 6 countries.

Zhongshan ChengDepartment of Microbiology.
Jie ZhouDepartment of Microbiology Research Centre of Infection and Immunology State Key Laboratory of Emerging Infectious Diseases.
Kelvin Kai-Wang ToDepartment of Microbiology Research Centre of Infection and Immunology State Key Laboratory of Emerging Infectious Diseases Carol Yu Centre for Infection.
Hin ChuDepartment of Microbiology Research Centre of Infection and Immunology State Key Laboratory of Emerging Infectious Diseases.
Cun LiDepartment of Microbiology.
Dong WangDepartment of Microbiology.
Dong YangDepartment of Microbiology.
Shufa ZhengState Key Laboratory for Diagnosis and Treatment of Infectious Diseases, First Affiliated Hospital, College of Medicine, Zhejiang University, China.
Ke HaoDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York.
Yohan BosséDepartment of Molecular Medicine, Institut Universitaire de Cardiologie et de Pneumologie de Québec, Laval University.
Ma'en ObeidatUniversity of British Columbia Center for Heart Lung Innovation, St Paul's Hospital, Vancouver, Canada.
Corry-Anke BrandsmaDepartment of Pathology and Medical Biology, University of Groningen, University Medical Center Groningen, Groningen Research Institute for Asthma and COPD, The Netherlands.
You-Qiang SongDepartment of Biochemistry, The University of Hong Kong, Pok Fu Lam.
Yu ChenState Key Laboratory for Diagnosis and Treatment of Infectious Diseases, First Affiliated Hospital, College of Medicine, Zhejiang University, China.
Bo-Jian ZhengDepartment of Microbiology Research Centre of Infection and Immunology State Key Laboratory of Emerging Infectious Diseases.
Lanjuan LiState Key Laboratory for Diagnosis and Treatment of Infectious Diseases, First Affiliated Hospital, College of Medicine, Zhejiang University, China.
Kwok-Yung YuenDepartment of Microbiology Research Centre of Infection and Immunology State Key Laboratory of Emerging Infectious Diseases Carol Yu Centre for Infection.
Zhejiang University · CNBiology of Infection · FRIcahn School of Medicine at Mount Sinai · USSt. Paul's Hospital · CAUniversité Laval · CAUniversity of Groningen · NLUniversity of Hong Kong · HK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genetic predisposition to severe A(H1N1)2009 (A[H1N1]pdm09) influenza was evaluated in 409 patients, including 162 cases with severe infection and 247 controls with mild infection. We prioritized candidate variants based on the result of a pilot genome-wide association study and a lung expression quantitative trait locus data set. The GG genotype of rs2070788, a higher-expression variant of TMPRSS2, was a risk variant (odds ratio, 2.11; 95% confidence interval, 1.18-3.77; P = .01) to severe A(H1N1)pdm09 influenza. A potentially functional single-nucleotide polymorphism, rs383510, accommodated in a putative regulatory region was identified to tag rs2070788. Luciferase assay results showed the putative regulatory region was a functional element, in which rs383510 regulated TMPRSS2 expression in a genotype-specific manner. Notably, rs2070788 and rs383510 were significantly associated with the susceptibility to A(H7N9) influenza in 102 patients with A(H7N9) influenza and 106 healthy controls. Therefore, we demonstrate that genetic variants with higher TMPRSS2 expression confer higher risk to severe A(H1N1)pdm09 influenza. The same variants also increase susceptibility to human A(H7N9) influenza.

Indexed as

Polymorphism, Single NucleotideAdultAgedCohort StudiesFemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyGenotypeHumansInfluenza A Virus, H1N1 SubtypeInfluenza A Virus, H7N9 SubtypeInfluenza, HumanLungMaleMiddle AgedQuantitative Trait LociSerine EndopeptidasesTMPRSS2 protein, humanA(H1N1)pdm09 influenzaA(H7N9) influenzagenetic variationlung eQTLTMPRSS2

Identifiers

PMID25904605
PMCPMC7107393
OpenAlexW2149059384

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.