Evidence map›Paper›PMID 25904329›Full record

ArticleMolecular biology of the cell2015

ABCF1 extrinsically regulates retinal pigment epithelial cell phagocytosis.

Feiye Guo, Ying Ding, Nora Caberoy, Gabriela Alvarado, Feng Wang, Rui Chen, Wei Li

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact, top 98% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 citations in OpenAlex.

  1. Review
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  9. Review
  10. Comparative Ligandomic Analysis of Human Lung Epithelial Cells Exposed to PMBiomedical and environmental sciences : BES · 2020
    Article
  11. Zika Infection Disrupts Proteins Involved in the Neurosensory System.Frontiers in cell and developmental biology · 2020
    Article
  12. Article
  13. Article
  14. Review
  15. Secretogranin III: a diabetic retinopathy-selective angiogenic factor.Cellular and molecular life sciences : CMLS · 2018
    Review
  16. Review
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Feiye GuoBascom Palmer Eye Institute, Department of Ophthalmology, University of Miami School of Medicine, Miami, FL 33136.
Ying DingBascom Palmer Eye Institute, Department of Ophthalmology, University of Miami School of Medicine, Miami, FL 33136.
Nora CaberoySchool of Life Sciences, University of Nevada-Las Vegas, Las Vegas, NV 89154.
Gabriela AlvaradoBascom Palmer Eye Institute, Department of Ophthalmology, University of Miami School of Medicine, Miami, FL 33136.
Feng WangDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030.
Rui ChenDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030.
Wei LiBascom Palmer Eye Institute, Department of Ophthalmology, University of Miami School of Medicine, Miami, FL 33136 w.li@med.miami.edu.
University of Miami · USBaylor College of Medicine · USUniversity of Nevada, Las Vegas · US

Funding

Shared Equipment ModuleP30EY014801 · NEI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Victor L Perez · 2004 to 2026
$12.2M
Elucidation of Tubby and Tulp 1 Mechanisms by Comparitive Functional ProteomicsR01GM094449 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI LI, WEI · 2011 to 2014
$1.1M
Unraveling the Mystery of Molecular Phagocyte Biology for MicrogliaR21HD075372 · NICHD · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI LI, WEI · 2012 to 2013
$411k
NEI NIH HHS P30 EY014801NEI NIH HHS P30-EY014801NICHD NIH HHS R21 HD075372NICHD NIH HHS R21HD075372NIGMS NIH HHS R01 GM094449NIGMS NIH HHS R01GM094449
6 · The paper itself

Abstract

Phagocytosis of shed photoreceptor outer segments (POSs) by retinal pigment epithelial (RPE) cells is critical to retinal homeostasis and shares many conserved signaling pathways with other phagocytes, including extrinsic regulations. Phagocytotic ligands are the key to cargo recognition, engulfment initiation, and activity regulation. In this study, we identified intracellular protein ATP-binding cassette subfamily F member 1 (ABCF1) as a novel RPE phagocytotic ligand by a new approach of functional screening. ABCF1 was independently verified to extrinsically promote phagocytosis of shed POSs by D407 RPE cells. This finding was further corroborated with primary RPE cells and RPE explants. Internalized POS vesicles were colocalized with a phagosome marker, suggesting that ABCF1-mediated engulfment is through a phagocytic pathway. ABCF1 was released from apoptotic cells and selectively bound to shed POS vesicles and apoptotic cells, possibly via externalized phosphatidylserine. ABCF1 is predominantly expressed in POSs and colocalized with the POS marker rhodopsin, providing geographical convenience for regulation of RPE phagocytosis. Collectively these results suggest that ABCF1 is released from and binds to shed POSs in an autocrine manner to facilitate RPE phagocytosis through a conserved pathway. Furthermore, the new approach is broadly applicable to many other phagocytes and will enable systematic elucidation of their ligands to understand extrinsic regulation and cargo recognition.

Indexed as

PhagocytosisAnimalsATP-Binding Cassette TransportersCells, CulturedHumansLigandsMiceRetinal Photoreceptor Cell Outer SegmentRetinal Pigment EpitheliumABCF1 protein, humanABCF1 protein, mouseATP-Binding Cassette TransportersLigands

Identifiers

PMID25904329
PMCPMC4462947
OpenAlexW1534066500

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.