Evidence map›Paper›PMID 25904147›Full record

ArticleThe Journal of general virology2015

Influenza A virus evolution and spatio-temporal dynamics in Eurasian wild birds: a phylogenetic and phylogeographical study of whole-genome sequence data.

Nicola S Lewis, Josanne H Verhagen, Zurab Javakhishvili, Colin A Russell, Pascal Lexmond, Kim B Westgeest, Theo M Bestebroer, Rebecca A Halpin, Xudong Lin, Amy Ransier and 10 more

Abstract read
In one paragraph

Article in The Journal of general virology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Nicola S LewisDepartment of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK.
Josanne H VerhagenDepartment of Viroscience, Erasmus MC, PO Box 2040, 3000 CA, Rotterdam, The Netherlands.
Zurab JavakhishviliInstitute of Ecology, Ilia State University, 3/5 Cholokashvili, Tbilisi, Georgia.
Colin A RussellDepartment of Veterinary Medicine, University of Cambridge, Madingley Road, Cambridge CB3 0ES, UK.
Pascal LexmondDepartment of Viroscience, Erasmus MC, PO Box 2040, 3000 CA, Rotterdam, The Netherlands.
Kim B WestgeestDepartment of Viroscience, Erasmus MC, PO Box 2040, 3000 CA, Rotterdam, The Netherlands.
Theo M BestebroerDepartment of Viroscience, Erasmus MC, PO Box 2040, 3000 CA, Rotterdam, The Netherlands.
Rebecca A HalpinJ. Craig Venter Institute, Rockville, MD, 20850, USA.
Xudong LinJ. Craig Venter Institute, Rockville, MD, 20850, USA.
Amy RansierJ. Craig Venter Institute, Rockville, MD, 20850, USA.
Nadia B FedorovaJ. Craig Venter Institute, Rockville, MD, 20850, USA.
Timothy B StockwellJ. Craig Venter Institute, Rockville, MD, 20850, USA.
Neus Latorre-MargalefCentre for Ecology and Evolution in Microbial Model Systems, Linnaeus University, Kalmar, Sweden.
Björn OlsenDepartment of Medical Sciences, Zoonosis Science Center, Uppsala University, Uppsala, Sweden.
Gavin SmithLaboratory of Virus Evolution, Program in Emerging Infectious Diseases, Duke-NUS Graduate Medical School, Singapore.
Justin BahlLaboratory of Virus Evolution, Program in Emerging Infectious Diseases, Duke-NUS Graduate Medical School, Singapore.
David E WentworthJ. Craig Venter Institute, Rockville, MD, 20850, USA.
Jonas WaldenströmCentre for Ecology and Evolution in Microbial Model Systems, Linnaeus University, Kalmar, Sweden.
Ron A M FouchierDepartment of Viroscience, Erasmus MC, PO Box 2040, 3000 CA, Rotterdam, The Netherlands.
Miranda de GraafDepartment of Viroscience, Erasmus MC, PO Box 2040, 3000 CA, Rotterdam, The Netherlands.

Funding

NIAID NIH HHS HHSN266200700010CNIAID NIH HHS HHSN272200900007CNIAID NIH HHS HHSN272201400006CNIAID NIH HHS HHSN272201400008CWellcome TrustWellcome Trust WT089235MFWETP NIH HHS WT089235MF
6 · The paper itself

Abstract

Low pathogenic avian influenza A viruses (IAVs) have a natural host reservoir in wild waterbirds and the potential to spread to other host species. Here, we investigated the evolutionary, spatial and temporal dynamics of avian IAVs in Eurasian wild birds. We used whole-genome sequences collected as part of an intensive long-term Eurasian wild bird surveillance study, and combined this genetic data with temporal and spatial information to explore the virus evolutionary dynamics. Frequent reassortment and co-circulating lineages were observed for all eight genomic RNA segments over time. There was no apparent species-specific effect on the diversity of the avian IAVs. There was a spatial and temporal relationship between the Eurasian sequences and significant viral migration of avian IAVs from West Eurasia towards Central Eurasia. The observed viral migration patterns differed between segments. Furthermore, we discuss the challenges faced when analysing these surveillance and sequence data, and the caveats to be borne in mind when drawing conclusions from the apparent results of such analyses.

Indexed as

Evolution, MolecularGenome, ViralPhylogenyAnimal MigrationAnimalsAnimals, WildBirdsInfluenza A virusInfluenza in BirdsMolecular Sequence DataPhylogeographyRNA, ViralRNA, Viral

Identifiers

PMID25904147
PMCPMC4681060

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.