Evidence map›Paper›PMID 25904138›Full record

ArticleRNA (New York, N.Y.)2015

Noncoding RNAs that associate with YB-1 alter proliferation in prostate cancer cells.

Teresa T Liu, Gustavo Arango-Argoty, Zhihua Li, Yuefeng Lin, Sang Woo Kim, Anne Dueck, Fatih Ozsolak, A Paula Monaghan, Gunter Meister, Donald B DeFranco and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 23 citations in OpenAlex.

  1. Y-box binding proteins in immunity and RNA virus infection.Microbiology and molecular biology reviews : MMBR · 2025
    Review
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  11. Broad role for YBX1 in defining the small noncoding RNA composition of exosomes.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Teresa T LiuDepartment of Computational and Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15260, USA.
Gustavo Arango-ArgotyDepartment of Computational and Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15260, USA.
Zhihua LiDepartment of Computational and Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15260, USA.
Yuefeng LinDepartment of Computational and Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15260, USA.
Sang Woo KimDepartment of Computational and Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15260, USA.
Anne DueckUniversity of Regensburg, Biochemistry I, 93053 Regensburg, Bavaria, Germany.
Fatih OzsolakHelicos BioSciences Corporation, Cambridge, Massachusetts 02139, USA.
A Paula MonaghanDepartment of Neurobiology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15260, USA.
Gunter MeisterUniversity of Regensburg, Biochemistry I, 93053 Regensburg, Bavaria, Germany.
Donald B DeFrancoDepartment of Pharmacology and Chemical Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15260, USA.
Bino JohnDepartment of Computational and Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15260, USA.
University of Pittsburgh · USUniversity of Regensburg · DEHelicos Biosciences (United States) · US

Funding

Evolution, Biogenesis, and Function of microRNAsR01GM079756 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI JOHN, BINO · 2007 to 2011
$1.5M
NIGMS NIH HHS GM079756NIGMS NIH HHS R01 GM079756
6 · The paper itself

Abstract

The highly conserved, multifunctional YB-1 is a powerful breast cancer prognostic indicator. We report on a pervasive role for YB-1 in which it associates with thousands of nonpolyadenylated short RNAs (shyRNAs) that are further processed into small RNAs (smyRNAs). Many of these RNAs have previously been identified as functional noncoding RNAs (http://www.johnlab.org/YB1). We identified a novel, abundant, 3'-modified short RNA antisense to Dicer1 (Shad1) that colocalizes with YB-1 to P-bodies and stress granules. The expression of Shad1 was shown to correlate with that of YB-1 and whose inhibition leads to an increase in cell proliferation. Additionally, Shad1 influences the expression of additional prognostic markers of cancer progression such as DLX2 and IGFBP2. We propose that the examination of these noncoding RNAs could lead to better understanding of prostate cancer progression.

Indexed as

AnimalsCell BodyCell ProliferationChlorocebus aethiopsCOS CellsDEAD-box RNA HelicasesGene Expression Regulation, NeoplasticHEK293 CellsHeLa CellsHumansMaleMCF-7 CellsProstatic NeoplasmsRibonuclease IIIRNA, UntranslatedSequence Analysis, RNADEAD-box RNA HelicasesDICER1 protein, humanRibonuclease IIIRNA, UntranslatedShad1 noncoding RNA, humanY-Box-Binding Protein 1YBX1 protein, humanmiRNAsnoncoding RNAsprostate cancerYB-1

Identifiers

PMID25904138
PMCPMC4436668
OpenAlexW2070276048

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.