Evidence map›Paper›PMID 25903135›Full record

ArticleThe Journal of biological chemistry2015

Olfactomedin-1 Has a V-shaped Disulfide-linked Tetrameric Structure.

Matti F Pronker, Trusanne G A A Bos, Thomas H Sharp, Dominique M E Thies-Weesie, Bert J C Janssen

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Matti F PronkerFrom the Crystal and Structural Chemistry, Bijvoet Center for Biomolecular Research and.
Trusanne G A A BosFrom the Crystal and Structural Chemistry, Bijvoet Center for Biomolecular Research and.
Thomas H SharpSection Electron Microscopy, Department of Molecular Cell Biology, Leiden University Medical Center, 2300 RC Leiden, The Netherlands.
Dominique M E Thies-WeesieVan't Hoff Laboratory for Physical and Colloid Chemistry, Debye Institute of Nanomaterials Science, Department of Chemistry, Faculty of Science, Utrecht University, 3584 CH Utrecht, The Netherlands and.
Bert J C JanssenFrom the Crystal and Structural Chemistry, Bijvoet Center for Biomolecular Research and b.j.c.janssen@uu.nl.
Utrecht University · NLLeiden University Medical Center · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Olfactomedin-1 (Olfm1; also known as noelin and pancortin) is a member of the olfactomedin domain-containing superfamily and a highly expressed neuronal glycoprotein important for nervous system development. It binds a number of secreted proteins and cell surface-bound receptors to induce cell signaling processes. Using a combined approach of x-ray crystallography, solution scattering, analytical ultracentrifugation, and electron microscopy we determined that full-length Olfm1 forms disulfide-linked tetramers with a distinctive V-shaped architecture. The base of the "V" is formed by two disulfide-linked dimeric N-terminal domains. Each of the two V legs consists of a parallel dimeric disulfide-linked coiled coil with a C-terminal β-propeller dimer at the tips. This agrees with our crystal structure of a C-terminal coiled-coil segment and β-propeller combination (Olfm1(coil-Olf)) that reveals a disulfide-linked dimeric arrangement with the β-propeller top faces in an outward exposed orientation. Similar to its family member myocilin, Olfm1 is stabilized by calcium. The dimer-of-dimers architecture suggests a role for Olfm1 in clustering receptors to regulate signaling and sheds light on the conformation of several other olfactomedin domain family members.

Indexed as

Amino Acid SequenceAnimalsCrystallography, X-RayExtracellular Matrix ProteinsGlycoproteinsHEK293 CellsHumansMiceModels, MolecularMolecular Sequence DataProtein BindingProtein Structure, QuaternarySequence Homology, Amino AcidExtracellular Matrix ProteinsGlycoproteinsolfactomedinanalytical ultracentrifugationcell signalingcoiled coildevelopmentdisulfideelectron tomographyneurobiologyolfactomedin-1 (Olfm1)small angle x-ray scattering (SAXS)x-ray crystallography

Identifiers

PMID25903135
PMCPMC4463452
OpenAlexW2150688268

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.