Evidence map›Paper›PMID 25903131›Full record

ArticleThe Journal of biological chemistry2015

Oxidatively Generated Guanine(C8)-Thymine(N3) Intrastrand Cross-links in Double-stranded DNA Are Repaired by Base Excision Repair Pathways.

Ibtissam Talhaoui, Vladimir Shafirovich, Zhi Liu, Christine Saint-Pierre, Zhiger Akishev, Bakhyt T Matkarimov, Didier Gasparutto, Nicholas E Geacintov, Murat Saparbaev

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
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  4. Phenolic profile and antioxidant activity from peels and seeds of melon (Cucumis melo L. var. reticulatus) and their antiproliferative effect in cancer cells.Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologica · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 7 institutions in 3 countries.

Ibtissam TalhaouiFrom the Groupe "Réparation de l'ADN," CNRS UMR8200, Université Paris-Sud, Institut de Cancérologie Gustave Roussy, F-94805 Villejuif Cedex, France.
Vladimir Shafirovichthe Chemistry Department, New York University, New York, New York 10003-5180 vs5@nyu.edu.
Zhi Liuthe Chemistry Department, New York University, New York, New York 10003-5180.
Christine Saint-PierreUniversité Grenoble Alpes, CEA, INAC/SCIB-UMR E3/LAN, F-38000 Grenoble, France.
Zhiger AkishevDepartment of Molecular Biology and Genetics, Faculty of Biology, al-Farabi Kazakh National University, 530038, Almaty, Kazakhstan.
Bakhyt T MatkarimovNazarbayev University Research and Innovation System, Astana 010000, Kazakhstan, and.
Didier GasparuttoUniversité Grenoble Alpes, CEA, INAC/SCIB-UMR E3/LAN, F-38000 Grenoble, France.
Nicholas E Geacintovthe Chemistry Department, New York University, New York, New York 10003-5180 ng1@nyu.edu.
Murat SaparbaevFrom the Groupe "Réparation de l'ADN," CNRS UMR8200, Université Paris-Sud, Institut de Cancérologie Gustave Roussy, F-94805 Villejuif Cedex, France, smurat@igr.fr.
New York University · USAl-Farabi Kazakh National University · KZCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRInstitut Gustave Roussy · FRInstitut Nanosciences et Cryogénie · FRKazMunayGas (Kazakhstan) · KZStabilité génétique et oncogenèse · FR

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
Reaction pathways &products of guanine radicals in DNAR01ES011589 · NIEHS · NEW YORK UNIVERSITY · PI SHAFIROVICH, VLADIMIR · 2002 to 2014
$4.1M
SHARED INSTR FACILITIY FOR THE LIFE SCIC06RR016572 · NCRR · NEW YORK UNIVERSITY · PI LENNIE, PETER · 2001 to 2001
$665k
NCI NIH HHS P30 CA016087NCRR NIH HHS C06 RR016572NCRR NIH HHS C06 RR-16572NIEHS NIH HHS R01 ES 011589NIEHS NIH HHS R01 ES011589
6 · The paper itself

Abstract

Oxidatively generated guanine radical cations in DNA can undergo various nucleophilic reactions including the formation of C8-guanine cross-links with adjacent or nearby N3-thymines in DNA in the presence of O2. The G*[C8-N3]T* lesions have been identified in the DNA of human cells exposed to oxidative stress, and are most likely genotoxic if not removed by cellular defense mechanisms. It has been shown that the G*[C8-N3]T* lesions are substrates of nucleotide excision repair in human cell extracts. Cleavage at the sites of the lesions was also observed but not further investigated (Ding et al. (2012) Nucleic Acids Res. 40, 2506-2517). Using a panel of eukaryotic and prokaryotic bifunctional DNA glycosylases/lyases (NEIL1, Nei, Fpg, Nth, and NTH1) and apurinic/apyrimidinic (AP) endonucleases (Apn1, APE1, and Nfo), the analysis of cleavage fragments by PAGE and MALDI-TOF/MS show that the G*[C8-N3]T* lesions in 17-mer duplexes are incised on either side of G*, that none of the recovered cleavage fragments contain G*, and that T* is converted to a normal T in the 3'-fragment cleavage products. The abilities of the DNA glycosylases to incise the DNA strand adjacent to G*, while this base is initially cross-linked with T*, is a surprising observation and an indication of the versatility of these base excision repair proteins.

Indexed as

DNA RepairBase SequenceDNADNA GlycosylasesHeLa CellsHumansMolecular Sequence DataOligonucleotidesOxidation-ReductionDNADNA GlycosylasesOligonucleotidesbase excision repair (BER)DNA damageDNA endonucleaseDNA repairnucleotide excision repair

Identifiers

PMID25903131
PMCPMC4505527
OpenAlexW2027048245

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.