Evidence map›Paper›PMID 25903130›Full record

ArticleThe Journal of biological chemistry2015

Assembly Pathway and Characterization of the RAG1/2-DNA Paired and Signal-end Complexes.

Mikalai Lapkouski, Watchalee Chuenchor, Min-Sung Kim, Martin Gellert, Wei Yang

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. A Synthetic Platform for Antibody Junctional Diversification Beyond Natural Constraints.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Review
  7. How mouse RAG recombinase avoids DNA transposition.Nature structural & molecular biology · 2020
    Article
  8. Cutting antiparallel DNA strands in a single active site.Nature structural & molecular biology · 2020
    Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Mikalai LapkouskiFrom the Laboratory of Molecular Biology, NIDDK, National Institutes of Health, Bethesda, Maryland 20892.
Watchalee ChuenchorFrom the Laboratory of Molecular Biology, NIDDK, National Institutes of Health, Bethesda, Maryland 20892.
Min-Sung KimFrom the Laboratory of Molecular Biology, NIDDK, National Institutes of Health, Bethesda, Maryland 20892.
Martin GellertFrom the Laboratory of Molecular Biology, NIDDK, National Institutes of Health, Bethesda, Maryland 20892.
Wei YangFrom the Laboratory of Molecular Biology, NIDDK, National Institutes of Health, Bethesda, Maryland 20892 wei.yang@nih.gov.
National Institutes of Health · USNational Institute of Diabetes and Digestive and Kidney Diseases · US

Funding

Structural studies of the post-cleavage complex in V(D)J recombinationZIADK036167 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI GELLERT, MARTIN F. · 2009 to 2025
$21.4M
The post-cleavage complex in V(D)J recombinationZ01DK036167 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI GELLERT, MARTIN F. · 2007 to 2008
$1.1M
Structural and mechanistic studies of V(D)J recombinationZ01DK036147 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI YANG, WEI · 2007 to 2008
$601k
Intramural NIH HHS Z01 DK036147Intramural NIH HHS Z01 DK036167
6 · The paper itself

Abstract

Mammalian immune receptor diversity is established via a unique restricted set of site-specific DNA rearrangements in lymphoid cells, known as V(D)J recombination. The lymphoid-specific RAG1-RAG2 protein complex (RAG1/2) initiates this process by binding to two types of recombination signal sequences (RSS), 12RSS and 23RSS, and cleaving at the boundaries of RSS and V, D, or J gene segments, which are to be assembled into immunoglobulins and T-cell receptors. Here we dissect the ordered assembly of the RAG1/2 heterotetramer with 12RSS and 23RSS DNAs. We find that RAG1/2 binds only a single 12RSS or 23RSS and reserves the second DNA-binding site specifically for the complementary RSS, to form a paired complex that reflects the known 12/23 rule of V(D)J recombination. The assembled RAG1/2 paired complex is active in the presence of Mg(2+), the physiologically relevant metal ion, in nicking and double-strand cleavage of both RSS DNAs to produce a signal-end complex. We report here the purification and initial crystallization of the RAG1/2 signal-end complex for atomic-resolution structure elucidation. Strict pairing of the 12RSS and 23RSS at the binding step, together with information from the crystal structure of RAG1/2, leads to a molecular explanation of the 12/23 rule.

Indexed as

DNA CleavageAnimalsBase SequenceBinding SitesCrystallizationDNADNA-Binding ProteinsGene ExpressionHEK293 CellsHomeodomain ProteinsHumansMiceProtein MultimerizationV(D)J RecombinationDNADNA-Binding ProteinsHomeodomain ProteinsRAG-1 proteinRag2 protein, mouseDNA cleavageDNA endonucleaseDNA enzymeimmunodeficiencymammalmammalian expressionmetal ionsprotein complexprotein crystallizationV(D)J recombination

Identifiers

PMID25903130
PMCPMC4505528
OpenAlexW2093554350

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.