Evidence map›Paper›PMID 25902549›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

The resurrection genome of Boea hygrometrica: A blueprint for survival of dehydration.

Lihong Xiao, Ge Yang, Liechi Zhang, Xinhua Yang, Shuang Zhao, Zhongzhong Ji, Qing Zhou, Min Hu, Yu Wang, Ming Chen and 14 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed, 1 pooled it
29.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 1 synthesis or guideline pooled it, 176 citations in OpenAlex.

  1. Pooled it
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  9. Ecology and evolution · 2024
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  16. Expansion and adaptive evolution of theMarine life science & technology · 2023
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  17. An improved assembly of the "Cascade" hop (Horticulture research · 2023
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  18. Protein Changes in Shade and SunPlants (Basel, Switzerland) · 2023
    Article
  19. Article
  20. Article

20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 6 institutions in 2 countries.

Lihong XiaoSchool of Life Sciences, Capital Normal University, Beijing 100048, China;
Ge YangSchool of Life Sciences, Capital Normal University, Beijing 100048, China;
Liechi ZhangSchool of Life Sciences, Capital Normal University, Beijing 100048, China;
Xinhua YangBeijing Genomics Institute-Shenzhen, Shenzhen 518083, China;
Shuang ZhaoBeijing Genomics Institute-Shenzhen, Shenzhen 518083, China;
Zhongzhong JiSchool of Life Sciences, Capital Normal University, Beijing 100048, China;
Qing ZhouBeijing Genomics Institute-Shenzhen, Shenzhen 518083, China;
Min HuBeijing Genomics Institute-Shenzhen, Shenzhen 518083, China;
Yu WangSchool of Life Sciences, Capital Normal University, Beijing 100048, China;
Ming ChenBeijing Genomics Institute-Shenzhen, Shenzhen 518083, China;
Yu XuSchool of Life Sciences, Capital Normal University, Beijing 100048, China;
Haijing JinSchool of Life Sciences, Capital Normal University, Beijing 100048, China;
Xuan XiaoSchool of Life Sciences, Capital Normal University, Beijing 100048, China;
Guipeng HuSchool of Life Sciences, Capital Normal University, Beijing 100048, China;
Fang BaoSchool of Life Sciences, Capital Normal University, Beijing 100048, China;
Yong HuSchool of Life Sciences, Capital Normal University, Beijing 100048, China;
Ping WanSchool of Life Sciences, Capital Normal University, Beijing 100048, China;
Legong LiSchool of Life Sciences, Capital Normal University, Beijing 100048, China;
Xin DengKey Laboratory of Plant Resources and.
Tingyun KuangKey Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China;
Chengbin XiangSchool of Life Sciences, University of Science and Technology of China, Hefei 230022, China;
Jian-Kang ZhuShanghai Center for Plant Stress Biology, Chinese Academy of Sciences, Shanghai 200032, China; Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907; and jkzhu@purdue.edu Mel.Oliver@ars.usda.gov yhe@cnu.edu.cn.
Melvin J OliverPlant Genetics Research Unit, Midwest Area, Agricultural Research Service, United State Department of Agriculture, University of Missouri, Columbia, MO 65211 jkzhu@purdue.edu Mel.Oliver@ars.usda.gov yhe@cnu.edu.cn.
Yikun HeSchool of Life Sciences, Capital Normal University, Beijing 100048, China; jkzhu@purdue.edu Mel.Oliver@ars.usda.gov yhe@cnu.edu.cn.
Capital Normal University · CNBGI Group (China) · CNCenter for Excellence in Molecular Plant Sciences · CNChinese Academy of Sciences · CNUnited States Department of State · USUniversity of Science and Technology of China · CN

Funding

A Stage I Study of Computer Based Training in CBT for Alcohol Use DisordersR21AA021405 · NIAAA · YALE UNIVERSITY · PI CARROLL, KATHLEEN M. · 2012 to 2013
$358k
NIAAA NIH HHS R21 AA021405
6 · The paper itself

Abstract

"Drying without dying" is an essential trait in land plant evolution. Unraveling how a unique group of angiosperms, the Resurrection Plants, survive desiccation of their leaves and roots has been hampered by the lack of a foundational genome perspective. Here we report the ∼1,691-Mb sequenced genome of Boea hygrometrica, an important resurrection plant model. The sequence revealed evidence for two historical genome-wide duplication events, a compliment of 49,374 protein-coding genes, 29.15% of which are unique (orphan) to Boea and 20% of which (9,888) significantly respond to desiccation at the transcript level. Expansion of early light-inducible protein (ELIP) and 5S rRNA genes highlights the importance of the protection of the photosynthetic apparatus during drying and the rapid resumption of protein synthesis in the resurrection capability of Boea. Transcriptome analysis reveals extensive alternative splicing of transcripts and a focus on cellular protection strategies. The lack of desiccation tolerance-specific genome organizational features suggests the resurrection phenotype evolved mainly by an alteration in the control of dehydration response genes.

Indexed as

DesiccationGenome, PlantAlgorithmsCell WallComputational BiologyCytoplasmGene Expression ProfilingGene Expression Regulation, PlantGenes, PlantMagnoliopsidaPhenotypePhotosynthesisPlant LeavesPlant ProteinsRNA, Ribosomal, 5STranscriptomePlant ProteinsRNA, Ribosomal, 5SBoea hygrometricadrought tolerance enhancementgenomeresurrection plantvegetative desiccation tolerance

Identifiers

PMID25902549
PMCPMC4426394
OpenAlexW1987583779

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.