Evidence map›Paper›PMID 25902543›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Two-sided block of a dual-topology F- channel.

Daniel L Turman, Jacob T Nathanson, Randy B Stockbridge, Timothy O Street, Christopher Miller

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Membrane Exporters of Fluoride Ion.Annual review of biochemistry · 2021
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Quantification of Membrane Protein-Detergent Complex Interactions.The journal of physical chemistry. B · 2017
    Article
  13. Article
  14. Article
  15. A topologically diverse family of fluoride channels.Current opinion in structural biology · 2017
    Review
  16. Protein ligands for studying ion channel proteins.The Journal of general physiology · 2017
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Daniel L TurmanDepartment of Biochemistry and Howard Hughes Medical Institute, Brandeis University, Waltham, MA 02454.
Jacob T NathansonDepartment of Biochemistry and Howard Hughes Medical Institute, Brandeis University, Waltham, MA 02454.
Randy B StockbridgeDepartment of Biochemistry and Howard Hughes Medical Institute, Brandeis University, Waltham, MA 02454.
Timothy O StreetDepartment of Biochemistry and.
Christopher MillerDepartment of Biochemistry and Howard Hughes Medical Institute, Brandeis University, Waltham, MA 02454 cmiller@brandeis.edu.
Brandeis University · USHoward Hughes Medical Institute · US

Funding

Macromolecular Structure MechanismT32GM007596 · NIGMS · BRANDEIS UNIVERSITY · PI OPRIAN, DANIEL D · 1985 to 2019
$4.5M
Mechanisms of Biological Fluoride Resistance ExportersR01GM107023 · NIGMS · BRANDEIS UNIVERSITY · PI MILLER, CHRISTOPHER · 2014 to 2017
$1.1M
The structure, function, and biological role of a microbial fluoride channelK99GM111767 · NIGMS · BRANDEIS UNIVERSITY · PI STOCKBRIDGE, RANDY B. · 2014 to 2015
$128k
Howard Hughes Medical InstituteNIGMS NIH HHS K99-GM11167NIGMS NIH HHS K99 GM111767NIGMS NIH HHS R01 GM107023NIGMS NIH HHS R01-GM107023NIGMS NIH HHS T32 GM007596
6 · The paper itself

Abstract

The Fluc family is a set of small membrane proteins forming F(-)-specific electrodiffusive ion channels that rescue microorganisms from F(-) toxicity during exposure to weakly acidic environments. The functional channel is built as a dual-topology homodimer with twofold symmetry parallel to the membrane plane. Fluc channels are blocked by nanomolar-affinity fibronectin-domain monobodies originally selected from phage-display libraries. The unusual symmetrical antiparallel dimeric architecture of Flucs demands that the two chemically equivalent monobody-binding epitopes reside on opposite ends of the channel, a double-sided blocking situation that has never before presented itself in ion channel biophysics. However, it is not known if both sites can be simultaneously occupied, and if so, whether monobodies bind independently or cooperatively to their transmembrane epitopes. Here, we use direct monobody-binding assays and single-channel recordings of a Fluc channel homolog to reveal a novel trimolecular blocking behavior that reveals a doubly occupied blocked state. Kinetic analysis of single-channel recordings made with monobody on both sides of the membrane shows substantial negative cooperativity between the two blocking sites.

Indexed as

AnisotropyAntibodies, MonoclonalBacterial ProteinsBinding SitesCysteineDose-Response Relationship, DrugEpitopesFluorescence PolarizationFluorineIon ChannelsKineticsLipid BilayersMicroscopy, FluorescenceModels, TheoreticalMutationNaphthalenesulfonates5-((2-aminoethyl)amino)naphthalene-1-sulfonic acidAntibodies, MonoclonalBacterial ProteinsCysteineEpitopesFluorineIon ChannelsLipid BilayersNaphthalenesulfonatesblockcooperativityion channelmonobody

Identifiers

PMID25902543
PMCPMC4426430
OpenAlexW2125825163

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.