ArticleImmunity2015
Thinking outside the gate: single-cell assessments in multiple dimensions.
Abstract readLetter
In one paragraph
Article in Immunity, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
29 citing papers in PubMed.
- Trial
- Guidelines for the use of flow cytometry and cell sorting in immunological studies (third edition).European journal of immunology · 2021Review
- Development of an objective index, neural activity score (NAS), reveals neural network ontogeny and treatment effects on microelectrode arrays.Scientific reports · 2021Article
- Single-cell peripheral immunoprofiling of Alzheimer's and Parkinson's diseases.Science advances · 2020Article
- A Cancer Biologist's Primer on Machine Learning Applications in High-Dimensional Cytometry.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2020Review
- Identification of a super-functional Tfh-like subpopulation in murine lupus by pattern perception.eLife · 2020Article
- Review
- Computational Analysis of Multiparametric Flow Cytometric Data to Dissect B Cell Subsets in Vaccine Studies.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2020Article
- Improving the Rigor and Reproducibility of Flow Cytometry-Based Clinical Research and Trials Through Automated Data Analysis.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2020Article
- Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition).European journal of immunology · 2019Article
- Article
- Data-Driven Flow Cytometry Analysis.Methods in molecular biology (Clifton, N.J.) · 2019Review
- A Computational Pipeline for the Diagnosis of CVID Patients.Frontiers in immunology · 2019Article
- Supervised Machine Learning with CITRUS for Single Cell Biomarker Discovery.Methods in molecular biology (Clifton, N.J.) · 2019Article
- A standardized immune phenotyping and automated data analysis platform for multicenter biomarker studies.JCI insight · 2018Article
- CytoML for cross-platform cytometry data sharing.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2018Article
- flowLearn: fast and precise identification and quality checking of cell populations in flow cytometry.Bioinformatics (Oxford, England) · 2018Article
- DAFi: A directed recursive data filtering and clustering approach for improving and interpreting data clustering identification of cell populations from polychromatic flow cytometry data.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2018Article
- ImmPort, toward repurposing of open access immunological assay data for translational and clinical research.Scientific data · 2018Article
- High throughput automated analysis of big flow cytometry data.Methods (San Diego, Calif.) · 2018Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
18 authors.
Pia KvistborgNetherlands Cancer Institute, 1006 BE Amsterdam, the Netherlands.
Cécile GouttefangeasInstitute for Cell Biology, Department of Immunology, University of Tübingen, 72076 Tuebingen, Germany.
Nima AghaeepourTerry Fox Laboratory, BC Cancer Agency, Vancouver, BC V5Z 1L3, Canada.
Angelica CazalyUniversity of Southampton, Southampton SO17 1BJ, UK.
Pratip K ChattopadhyayImmunoTechnology Section, Vaccine Research Center, NIH, Bethesda, MD 20892, USA.
Cliburn ChanDepartment of Biostatistics and Bioinformatics, Duke University Medical Center, Durham, NC 27710, USA.
Judith EcklHelmholtz Zentrum München, 85764 Neuherberg, Germany.
Greg FinakVaccine and Infectious Disease Division, Department of Biostatistics, Bioinformatics, and Epidemiology, Fred Hutchinson Cancer Research Center, Seattle, WA 98155, USA.
Sine Reker HadrupCenter for Cancer Immune Therapy, Herlev Hospital, 2730 Herlev, Denmark.
Holden T MaeckerInstitute for Immunity, Transplantation, and Infection, Stanford School of Medicine, Stanford University, Stanford, CA 94305, USA.
Dominik MaurerImmatics Biotechnologies GmbH, 72076 Tübingen, Germany.
Tim MosmannDavid D. Smith Center for Vaccine Biology and Immunology, University of Rochester Medical Center, Rochester, NY 14642, USA.
Peng QiuWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University School of Medicine, Atlanta, GA 30322, USA.
Richard H ScheuermannJ. Craig Venter Institute, La Jolla, CA 92037, USA; Department of Pathology, University of California, San Diego, San Diego, CA 92093, USA.
Marij J P WeltersDepartment of Clinical Oncology, Leiden University Medical Center, 2300 RA Leiden, the Netherlands.
Guido FerrariDepartment of Surgery, Duke University Medical Center, Durham, NC 27710, USA.
Ryan R BrinkmanTerry Fox Laboratory, BC Cancer Agency, Vancouver, BC V5Z 1L3, Canada. Electronic address: rbrinkman@bccrc.ca.
Cedrik M BrittenBioNTech RNA Pharmaceuticals GmbH, 55131 Mainz, Germany. Electronic address: cebritten@web.de.
Funding
Human Immunology Center at the University of RochesterR24AI054953 · NIAID · UNIVERSITY OF ROCHESTER · PI MOSMANN, TIM R. · 2003 to 2012
$8.8MThe Statistical and Computational Analysis of Flow Cytometry DataR01EB008400 · NIBIB · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GOTTARDO, RAPHAEL · 2008 to 2015
$2.9MIdentifying the cellular hierarchy and drug response of AML using cytometric dataR01CA163481 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI QIU, PENG · 2012 to 2015
$1.1MNCI NIH HHS R01 CA163481NIAID NIH HHS R24 AI054953NIBIB NIH HHS R01 EB008400
Abstract
PubMed holds no abstract for this paper.
Indexed as
SoftwareBiomarkersComputational BiologyFlow CytometryHumansImmunityLymphocytesSingle-Cell AnalysisBiomarkers
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.