Evidence map›Paper›PMID 25901825›Full record

ArticleNature chemistry2015

A protein-targeting strategy used to develop a selective inhibitor of the E17K point mutation in the PH domain of Akt1.

Kaycie M Deyle, Blake Farrow, Ying Qiao Hee, Jeremy Work, Michelle Wong, Bert Lai, Aiko Umeda, Steven W Millward, Arundhati Nag, Samir Das and 1 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Protein Catalyzed Capture (PCC) Agents for Antigen Targeting.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  6. Article
  7. Protein-Catalyzed Capture Agents.Chemical reviews · 2019
    Review
  8. Article
  9. Article
  10. Article
  11. Degradation of Akt using protein-catalyzed capture agents.Journal of peptide science : an official publication of the European Peptide Society · 2016
    Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Kaycie M DeyleDepartment of Chemistry, California Institute of Technology, Pasadena, California 91125, USA.
Blake FarrowDepartment of Applied Physics and Materials Science, California Institute of Technology, Pasadena, California 91125, USA.ORCID 0000000210077111
Ying Qiao HeeDepartment of Chemistry, California Institute of Technology, Pasadena, California 91125, USA.
Jeremy WorkDepartment of Chemistry, California Institute of Technology, Pasadena, California 91125, USA.
Michelle WongDepartment of Chemistry, California Institute of Technology, Pasadena, California 91125, USA.
Bert LaiIndi Molecular, Culver City, California 90230. USA.
Aiko UmedaDepartment of Chemistry, California Institute of Technology, Pasadena, California 91125, USA.
Steven W MillwardDepartment of Cancer Systems Imaging, University of Texas MD Anderson Cancer Center, Houston, Texas 77030, USA.
Arundhati NagDepartment of Chemistry, California Institute of Technology, Pasadena, California 91125, USA.
Samir DasDepartment of Chemistry, California Institute of Technology, Pasadena, California 91125, USA.
James R HeathDepartment of Chemistry, California Institute of Technology, Pasadena, California 91125, USA.
California Institute of Technology · USIndra (Spain) · ESThe University of Texas MD Anderson Cancer Center · US

Funding

QUANTITATIVE IMAGE ANALYSIS SPECIALIZED RESOURCE COREU54CA119347 · NCI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI HEATH, JAMES R. · 2005 to 2009
$17.8M
UCLA Institute for Molecular Medicine (IMED) CoreU54CA151819 · NCI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI HOOD, LEROY E · 2010 to 2014
$12.1M
Howard Hughes Medical InstituteNCI NIH HHS 5U54 CA119347NCI NIH HHS U54 CA119347NCI NIH HHS U54 CA151819
6 · The paper itself

Abstract

Ligands that can bind selectively to proteins with single amino-acid point mutations offer the potential to detect or treat an abnormal protein in the presence of the wild type (WT). However, it is difficult to develop a selective ligand if the point mutation is not associated with an addressable location, such as a binding pocket. Here we report an all-chemical synthetic epitope-targeting strategy that we used to discover a 5-mer peptide with selectivity for the E17K-transforming point mutation in the pleckstrin homology domain of the Akt1 oncoprotein. A fragment of Akt1 that contained the E17K mutation and an I19[propargylglycine] substitution was synthesized to form an addressable synthetic epitope. Azide-presenting peptides that clicked covalently onto this alkyne-presenting epitope were selected from a library using in situ screening. One peptide exhibits a 10:1 in vitro selectivity for the oncoprotein relative to the WT, with a similar selectivity in cells. This 5-mer peptide was expanded into a larger ligand that selectively blocks the E17K Akt1 interaction with its PIP3 (phosphatidylinositol (3,4,5)-trisphosphate) substrate.

Indexed as

Point MutationAmino Acid SequenceEpitopesLigandsMolecular Sequence DataProtein BindingProto-Oncogene Proteins c-aktAKT1 protein, humanEpitopesLigandsProto-Oncogene Proteins c-akt

Identifiers

PMID25901825
PMCPMC4408887
OpenAlexW1969640415

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.