Evidence map›Paper›PMID 25901726›Full record

ArticlePloS one2015

Identification of HBV-MLL4 Integration and Its Molecular Basis in Chinese Hepatocellular Carcinoma.

Hua Dong, Lan Zhang, Ziliang Qian, Xuehua Zhu, Guanshan Zhu, Yunqin Chen, Xiaoying Xie, Qinghai Ye, Jie Zang, Zhenggang Ren and 1 more

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed.

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  8. [Blood donor infected VHB detected by NAT probable phase in clinical resolution].Revista medica del Instituto Mexicano del Seguro Social · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Hua DongAstraZeneca Asian and Emerging market iMed, Zhangjiang Hi-Tech Park, Shanghai, P. R. China.
Lan ZhangLiver Cancer Institute, Zhongshan Hospital, Key Laboratory of Carcinogenesis and Cancer Invasion, Ministry of Education, Fudan University, Shanghai, P. R. China.
Ziliang QianAstraZeneca Asian and Emerging market iMed, Zhangjiang Hi-Tech Park, Shanghai, P. R. China.
Xuehua ZhuAstraZeneca Asian and Emerging market iMed, Zhangjiang Hi-Tech Park, Shanghai, P. R. China.
Guanshan ZhuAstraZeneca Asian and Emerging market iMed, Zhangjiang Hi-Tech Park, Shanghai, P. R. China.
Yunqin ChenR&D Information, AstraZeneca, Shanghai, P. R. China.
Xiaoying XieLiver Cancer Institute, Zhongshan Hospital, Key Laboratory of Carcinogenesis and Cancer Invasion, Ministry of Education, Fudan University, Shanghai, P. R. China.
Qinghai YeLiver Cancer Institute, Zhongshan Hospital, Key Laboratory of Carcinogenesis and Cancer Invasion, Ministry of Education, Fudan University, Shanghai, P. R. China.
Jie ZangAstraZeneca Asian and Emerging market iMed, Zhangjiang Hi-Tech Park, Shanghai, P. R. China.
Zhenggang RenLiver Cancer Institute, Zhongshan Hospital, Key Laboratory of Carcinogenesis and Cancer Invasion, Ministry of Education, Fudan University, Shanghai, P. R. China.
Qunsheng JiAstraZeneca Asian and Emerging market iMed, Zhangjiang Hi-Tech Park, Shanghai, P. R. China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To gain molecular insights of HBV integration that may contribute to HCC tumorigenesis, we performed whole transcriptome sequencing and whole genome copy number profiling of hepatocellular carcinoma (HCC) samples from 50 Chinese patients. We identified a total of 33 HBV-human integration sites in 16 of 44 HBV-positive HCC tissues, which were enriched in HBV genotype C-infected patients. In addition, significantly recurrent HBV-MLL4 integration (18%; 8/44) was found in this cohort of patients. Using long-range PCR and Sanger sequencing, we comprehensively characterized gDNA and cDNA sequences that encode for the HBV-MLL4 transcripts, and we revealed that HBV integration into MLL4 exons led to much higher mRNA expression of MLL4 than the integration into MLL4 introns due to an alternative splicing mechanism. Moreover, the HBV-MLL4 integration occurred almost exclusively in CTNNB1 and TP53 wild-type patients. The integration was also associated with a distinct gene expression profile. In conclusion, this is the first report on the molecular basis of the MLL4 integration driving MLL4 over-expression. HBV-MLL4 integration occurred frequently in Chinese HCC patients, representing a unique molecular segment for HCC with HBV infection.

Indexed as

Virus IntegrationAlternative SplicingAsian PeopleCarcinoma, HepatocellularDNA-Binding ProteinsGene Expression ProfilingGene Expression Regulation, NeoplasticGenome, HumanGenotypeHepatitis B virusHistone-Lysine N-MethyltransferaseHumansLiver NeoplasmsTranscription, GeneticDNA-Binding ProteinsHistone-Lysine N-MethyltransferaseMLL4 protein, human

Identifiers

PMID25901726
PMCPMC4406717

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.