Evidence map›Paper›PMID 25901663›Full record

ArticleScientific reports2015

The hypomethylating agent Decitabine causes a paradoxical increase in 5-hydroxymethylcytosine in human leukemia cells.

Basudev Chowdhury, Andrew McGovern, Yi Cui, Samrat Roy Choudhury, Il-Hoon Cho, Bruce Cooper, Timothy Chevassut, Amy C Lossie, Joseph Irudayaraj

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 37 citations in OpenAlex.

  1. DNA Methylation Dynamics inBiomolecules · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Cytosine methylase and hydroxymethylase activity in mammalian mitochondria.Frontiers in cell and developmental biology · 2025
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  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Basudev Chowdhury1] Department of Biological Sciences, Purdue University, West Lafayette 47907, IN [2] Bindley Biosciences Center, Discovery Park, Purdue University, West Lafayette 47907, IN.
Andrew McGovern1] Department of Healthcare Management and Policy, University of Surrey, Guildford, GY2 7XH, UK [2] Brighton and Sussex Medical School, Falmer, Brighton, East Sussex, BN1 9PS, UK.
Yi Cui1] Bindley Biosciences Center, Discovery Park, Purdue University, West Lafayette 47907, IN [2] Department of Agricultural and Biological Engineering, Purdue University, West Lafayette, IN 47907.
Samrat Roy Choudhury1] Bindley Biosciences Center, Discovery Park, Purdue University, West Lafayette 47907, IN [2] Department of Agricultural and Biological Engineering, Purdue University, West Lafayette, IN 47907.
Il-Hoon Cho1] Bindley Biosciences Center, Discovery Park, Purdue University, West Lafayette 47907, IN [2] Department of Agricultural and Biological Engineering, Purdue University, West Lafayette, IN 47907.
Bruce CooperBindley Biosciences Center, Discovery Park, Purdue University, West Lafayette 47907, IN.
Timothy ChevassutBrighton and Sussex Medical School, Falmer, Brighton, East Sussex, BN1 9PS, UK.
Amy C Lossie1] Bindley Biosciences Center, Discovery Park, Purdue University, West Lafayette 47907, IN [2] Department of Animal Sciences, Purdue University, West Lafayette, IN 47907.
Joseph Irudayaraj1] Bindley Biosciences Center, Discovery Park, Purdue University, West Lafayette 47907, IN [2] Department of Agricultural and Biological Engineering, Purdue University, West Lafayette, IN 47907.
Purdue University West Lafayette · USBrighton and Sussex Medical School · GB

Funding

Indiana Clinical and Translational Science Institute (UL1)UL1TR000006 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI SHEKHAR, ANANTHA · 2012 to 2013
$5.6M
Interdisciplinary Cancer Prevention Research Internship ProgramR25CA128770 · NCI · PURDUE UNIVERSITY · PI TEEGARDEN, DOROTHY · 2008 to 2012
$1.5M
NCATS NIH HHS TR000006NCATS NIH HHS UL1 TR000006NCI NIH HHS R25 CA128770NCI NIH HHS R25CA128770
6 · The paper itself

Abstract

The USFDA approved "epigenetic drug", Decitabine, exerts its effect by hypomethylating DNA, demonstrating the pivotal role aberrant genome-wide DNA methylation patterns play in cancer ontology. Using sensitive technologies in a cellular model of Acute Myeloid Leukemia, we demonstrate that while Decitabine reduces the global levels of 5-methylcytosine (5mC), it results in paradoxical increase of 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC) and 5-carboxylcytosine (5caC) levels. Hitherto, the only biological mechanism known to generate 5hmC, 5fC and 5caC, involving oxidation of 5mC by members of Ten-Eleven-Translocation (TET) dioxygenase family, was not observed to undergo any alteration during DAC treatment. Using a multi-compartmental model of DNA methylation, we show that partial selectivity of TET enzymes for hemi-methylated CpG dinucleotides could lead to such alterations in 5hmC content. Furthermore, we investigated the binding of TET1-catalytic domain (CD)-GFP to DNA by Fluorescent Correlation Spectroscopy in live cells and detected the gradual increase of the DNA bound fraction of TET1-CD-GFP after treatment with Decitabine. Our study provides novel insights on the therapeutic activity of DAC in the backdrop of the newly discovered derivatives of 5mC and suggests that 5hmC has the potential to serve as a biomarker for monitoring the clinical success of patients receiving DAC.

Indexed as

5-MethylcytosineAzacitidineCatalytic DomainChromatography, High Pressure LiquidCpG IslandsCytosineDecitabineDNA-Binding ProteinsDNA (Cytosine-5-)-MethyltransferasesDNA MethylationEnzyme-Linked Immunosorbent AssayHL-60 CellsHumansImmunohistochemistryLeukemia, Myeloid, AcuteMCF-7 Cells5-carboxylcytosine5-formylcytosine5-hydroxymethylcytosine5-MethylcytosineAzacitidineCytosineDecitabineDNA-Binding ProteinsDNA (Cytosine-5-)-MethyltransferasesMixed Function OxygenasesProto-Oncogene ProteinsTET1 protein, human

Identifiers

PMID25901663
PMCPMC4894448
OpenAlexW2036249471

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.