Evidence map›Paper›PMID 25901318›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Functional and mechanistic studies of XPC DNA-repair complex as transcriptional coactivator in embryonic stem cells.

Claudia Cattoglio, Elisa T Zhang, Ivan Grubisic, Kunitoshi Chiba, Yick W Fong, Robert Tjian

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 44 citations in OpenAlex.

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  13. Article
  14. XPA: DNA Repair Protein of Significant Clinical Importance.International journal of molecular sciences · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Claudia CattoglioDepartment of Molecular and Cell Biology, Howard Hughes Medical Institute, Li Ka Shing Center for Biomedical and Health Sciences, California Institute of Regenerative Medicine Center of Excellence.
Elisa T ZhangDepartment of Molecular and Cell Biology, Howard Hughes Medical Institute, Li Ka Shing Center for Biomedical and Health Sciences, California Institute of Regenerative Medicine Center of Excellence.
Ivan GrubisicDepartment of Molecular and Cell Biology, Howard Hughes Medical Institute, Li Ka Shing Center for Biomedical and Health Sciences, California Institute of Regenerative Medicine Center of Excellence, University of California Berkeley-University of California, San Francisco Graduate Program in Bioengineering, University of California, Berkeley, CA 94720; and.
Kunitoshi ChibaDepartment of Molecular and Cell Biology, Howard Hughes Medical Institute, Li Ka Shing Center for Biomedical and Health Sciences, California Institute of Regenerative Medicine Center of Excellence.
Yick W FongBrigham Regenerative Medicine Center, Cardiovascular Division, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Cambridge, MA 02139.
Robert TjianDepartment of Molecular and Cell Biology, Howard Hughes Medical Institute, Li Ka Shing Center for Biomedical and Health Sciences, California Institute of Regenerative Medicine Center of Excellence, jmlim@berkeley.edu.
Howard Hughes Medical Institute · USCalifornia Institute for Regenerative Medicine · USHarvard University · USInstitute of Molecular and Cell Biology · RU

Funding

Genome Sequencer FLXS10RR029668 · NCRR · UNIVERSITY OF CALIFORNIA BERKELEY · PI NGAI, JOHN J. · 2010 to 2010
$623k
Illumina Sequencer to Facilitate Functional Genomics at BerkeleyS10RR027303 · NCRR · UNIVERSITY OF CALIFORNIA BERKELEY · PI TAYLOR, JOHN W. · 2010 to 2010
$500k
Howard Hughes Medical InstituteNCRR NIH HHS S10 RR027303NCRR NIH HHS S10RR027303NCRR NIH HHS S10 RR029668NCRR NIH HHS S10RR029668
6 · The paper itself

Abstract

The embryonic stem cell (ESC) state is transcriptionally controlled by OCT4, SOX2, and NANOG with cofactors, chromatin regulators, noncoding RNAs, and other effectors of signaling pathways. Uncovering components of these regulatory circuits and their interplay provides the knowledge base to deploy ESCs and induced pluripotent stem cells. We recently identified the DNA-repair complex xeroderma pigmentosum C (XPC)-RAD23B-CETN2 as a stem cell coactivator (SCC) required for OCT4/SOX2 transcriptional activation. Here we investigate the role of SCC genome-wide in murine ESCs by mapping regions bound by RAD23B and analyzing transcriptional profiles of SCC-depleted ESCs. We establish OCT4 and SOX2 as the primary transcription factors recruiting SCC to regulatory regions of pluripotency genes and identify the XPC subunit as essential for interaction with the two proteins. The present study reveals new mechanistic and functional aspects of SCC transcriptional activity, and thus underscores the diversified functions of this regulatory complex.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsBinding SitesCell DifferentiationCell LineageDNA-Binding ProteinsDNA RepairEmbryonic Stem CellsGenomeHEK293 CellsHumansImmunoglobulin GLentivirusMiceMice, KnockoutPluripotent Stem CellsDNA-Binding ProteinsImmunoglobulin GRad23b protein, mouseSox2 protein, mouseSOXB1 Transcription FactorsTranscription FactorsXPC protein, humanChIP-seqpluripotencyprotein–protein interactionsRNA-seqtranscription

Identifiers

PMID25901318
PMCPMC4426448
OpenAlexW2072140342

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.