Evidence map›Paper›PMID 25900664›Full record

ArticleProteomics2015

Machine learning reveals sex-specific 17β-estradiol-responsive expression patterns in white perch (Morone americana) plasma proteins.

Justin Schilling, Angelito I Nepomuceno, Antonio Planchart, Jeffrey A Yoder, Robert M Kelly, David C Muddiman, Harry V Daniels, Naoshi Hiramatsu, Benjamin J Reading

Abstract read
In one paragraph

Article in Proteomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. An in vitro and machine learning framework for quantifying serum albumin binding of per- and polyfluoroalkyl substances.Toxicological sciences : an official journal of the Society of Toxicology · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Justin SchillingDepartment of Applied Ecology, North Carolina State University, Raleigh, NC, USA.
Angelito I NepomucenoW. M. Keck FTMS Laboratory for Human Health Research, Department of Chemistry, North Carolina State University, Raleigh, NC, USA.
Antonio PlanchartDepartment of Biological Sciences, North Carolina State University, Raleigh, NC, USA.
Jeffrey A YoderCenter for Human Health and the Environment, North Carolina State University, Raleigh, NC, USA.
Robert M KellyDepartment of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC, USA.
David C MuddimanW. M. Keck FTMS Laboratory for Human Health Research, Department of Chemistry, North Carolina State University, Raleigh, NC, USA.
Harry V DanielsDepartment of Applied Ecology, North Carolina State University, Raleigh, NC, USA.
Naoshi HiramatsuFaculty of Fisheries Sciences, Hokkaido University, Hakodate, Hokkaido, Japan.
Benjamin J ReadingDepartment of Applied Ecology, North Carolina State University, Raleigh, NC, USA.

Funding

Translational Research Support CoreP30ES025128 · NIEHS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI Andrew R. Binder · 2015 to 2026
$18.3M
NIEHS NIH HHS P30 ES025128
6 · The paper itself

Abstract

With growing abundance and awareness of endocrine disrupting compounds (EDCs) in the environment, there is a need for accurate and reliable detection of EDC exposure. Our objective in the present study was to observe differences within and between the global plasma proteomes of sexually mature male and female white perch (Morone americana) before (Initial Control, IC) and after 17β-estradiol (E2 ) induction. Semiquantitative nanoLC-MS/MS data were analyzed by machine learning support vector machines (SVMs) and by two-way ANOVA. By ANOVA, the expression levels of 44, 77, and 57 proteins varied significantly by gender, treatment, and the interaction of gender and treatment, respectively. SVMs perfectly classified male and female perch IC and E2 -induced plasma samples using the protein expression data. E2 -induced male and female perch plasma proteomes contained significantly higher levels of the yolk precursors vitellogenin Aa and Ab (VtgAa, VtgAb), as well as latrophilin and seven transmembrane domain-containing protein 1 (Eltd1) and kininogen 1 (Kng1). This is the first report that Eltd1 and Kng1 may be E2 -responsive proteins in fishes and therefore may be useful indicators of estrogen induction.

Indexed as

Support Vector MachineAnimalsBassBlood ProteinsBlotting, WesternChromatography, LiquidEstradiolEstrogensFemaleFish ProteinsKininogensMaleNanotechnologyProteomeProteomicsSex FactorsBlood ProteinsEstradiolEstrogensFish ProteinsKininogensProteomeVitellogeninsAnimal proteomicsEndocrine disrupting compoundsMachine learningPlasmaSemiquantitative proteomicsSupport vector machines

Identifiers

PMID25900664
PMCPMC5765861

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.