Evidence map›Paper›PMID 25900654›Full record

ArticlemBio2015

Neutralization properties of simian immunodeficiency viruses infecting chimpanzees and gorillas.

Hannah J Barbian, Julie M Decker, Frederic Bibollet-Ruche, Rachel P Galimidi, Anthony P West, Gerald H Learn, Nicholas F Parrish, Shilpa S Iyer, Yingying Li, Craig S Pace and 25 more

Open access · goldAbstract read
In one paragraph

Article in mBio, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 31 citations in OpenAlex.

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  6. Host ZAP activity correlates with the levels of CpG suppression in primate lentiviruses.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  11. HIV vaccinology: 2021 update.Seminars in immunology · 2021
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  12. Review
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  14. Article
  15. A great-ape view of the gut microbiome.Nature reviews. Genetics · 2019
    Review
  16. CD4 receptor diversity in chimpanzees protects against SIV infection.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

35 authors at 16 institutions in 4 countries.

Hannah J BarbianDepartments of Medicine and Microbiology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Julie M DeckerDepartment of Microbiology, The University of Alabama at Birmingham, Birmingham, Alabama, USA.
Frederic Bibollet-RucheDepartments of Medicine and Microbiology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Rachel P GalimidiDivision of Biology and Biological Engineering and Howard Hughes Medical Institute, California Institute of Technology, Pasadena, California, USA.
Anthony P WestDivision of Biology and Biological Engineering and Howard Hughes Medical Institute, California Institute of Technology, Pasadena, California, USA.
Gerald H LearnDepartments of Medicine and Microbiology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Nicholas F ParrishDepartments of Medicine and Microbiology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Shilpa S IyerDepartments of Medicine and Microbiology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Yingying LiDepartments of Medicine and Microbiology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Craig S PaceGilead Sciences, Foster City, California, USA.
Ruijiang SongAaron Diamond AIDS Research Center, The Rockefeller University, New York, New York, USA.
Yaoxing HuangAaron Diamond AIDS Research Center, The Rockefeller University, New York, New York, USA.
Thomas N DennyDuke Human Vaccine Institute, Duke University School of Medicine, Durham, North Carolina, USA.
Hugo Mouquet
Loic MartinCEA, iBiTecS, Service d'Ingénierie Moléculaire des Protéines, Gif-sur-Yvette, France.
Priyamvada AcharyaVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.
Baoshan ZhangVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.
Peter D KwongVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.
John R MascolaVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.
C Theo VerripsQVQ BV, Utrecht, the Netherlands.
Nika M StrokappeBiomolecular Imaging (BMI), Faculty of Science, Utrecht University, Utrecht, the Netherlands.
Lucy RuttenBiomolecular Imaging (BMI), Faculty of Science, Utrecht University, Utrecht, the Netherlands.
Laura E McCoyDivision of Infection and Immunity, University College London, London, United Kingdom.
Robin A WeissDivision of Infection and Immunity, University College London, London, United Kingdom.
Corrine S BrownChimp Haven, Inc., Keithville, Louisiana, USA.
Raven JacksonChimp Haven, Inc., Keithville, Louisiana, USA.
Guido SilvestriYerkes Regional Primate Research Center, Emory University, Atlanta, Georgia, USA.
Mark ConnorsLaboratory of Immunoregulation, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.
Dennis R BurtonDepartment of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California, USA.
George M ShawDepartments of Medicine and Microbiology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Michel C NussenzweigLaboratory of Molecular Immunology and Howard Hughes Medical Institute, The Rockefeller University, New York, New York, USA.
Pamela J BjorkmanDivision of Biology and Biological Engineering and Howard Hughes Medical Institute, California Institute of Technology, Pasadena, California, USA.
David D HoAaron Diamond AIDS Research Center, The Rockefeller University, New York, New York, USA.
Michael FarzanDepartment of Immunology and Microbial Science, The Scripps Research Institute, Jupiter, Florida, USA.
Beatrice H HahnDepartments of Medicine and Microbiology, University of Pennsylvania, Philadelphia, Pennsylvania, USA bhahn@upenn.edu.
University of Pennsylvania · USHoward Hughes Medical Institute · USNational Institutes of Health · USRockefeller University · USChimp Haven · USScripps Research Institute · USUniversity College London · GBUtrecht University · NLCalifornia Institute of Technology · USDuke University · USEmory University · USGilead Sciences (United States) · USInstitut de Biologie et Technologies · FRNational Institute of Allergy and Infectious Diseases · USQserve Group (Netherlands) · NLUniversity of Alabama at Birmingham · US

Funding

Yerkes National Primate Research Center Role of type-I IFN in regulating COVID-19 induced inflammation and pathogenesisP51OD011132 · OD · EMORY UNIVERSITY · PI Joon Sup Lee · 2012 to 2026
$167.0M
The Southwest National Primate Research Center Supplement- Infrastructure improvements of ABSL2 holding areasP51OD011133 · OD · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI Larry S. Schlesinger · 2012 to 2026
$129.7M
YNPRC NHP CLINICAL MEDICINE RESIDENCY PROGRAM - SUPPLEMENTP51RR000165 · NCRR · EMORY UNIVERSITY · PI ALTMAN, JOHN DAVID · 1985 to 2011
$114.0M
Virus & Reservoirs CoreP30AI045008 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ROBERT GROSS · 1999 to 2026
$78.6M
Mechanisms Of Humoral EvasionZIAAI005023 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI ZHOU, TONGQING · 2009 to 2025
$18.6M
Mechanisms of Effective Humoral Immune Responses to HIV-1ZIAAI001090 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI CONNORS, MARK · 2009 to 2025
$14.8M
Novel SIVsmm strains for analysis of mucosal transmission and vaccine protectionP01AI088564 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SHAW, GEORGE M · 2010 to 2014
$12.7M
Viral escape from AAV expressed transgenesP01AI100263 · NIAID · SCRIPPS FLORIDA · PI GAO, GUANGPING · 2012 to 2016
$11.9M
Therapeutic Use of an Enhanced Form of CD4-IgR37AI091476 · NIAID · UNIVERSITY OF FLORIDA · PI FARZAN, MICHAEL R. · 2016 to 2025
$9.2M
STUDIES OF NATURAL SIV INFECTION OF SOOTY MANGABEYSR37AI066998 · NIAID · EMORY UNIVERSITY · PI SILVESTRI, GUIDO · 2011 to 2020
$7.7M
Molecular Epidemiology and Natural History of SIVcpzR01AI058715 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2004 to 2013
$6.1M
Natural SIV Reservoirs and Human Zoonotic RiskR37AI050529 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2008 to 2017
$5.7M
NCRR NIH HHS P51 RR 000165NCRR NIH HHS P51 RR000165NIAID NIH HHS P01 AI 088564NIAID NIH HHS P01 AI088564NIAID NIH HHS P01 AI100263NIAID NIH HHS P30 AI 045008NIAID NIH HHS P30 AI045008NIAID NIH HHS R01 AI058715NIAID NIH HHS R01 AI 58715NIAID NIH HHS R37 AI050529NIAID NIH HHS R37 AI 066998NIAID NIH HHS R37 AI066998NIAID NIH HHS R37 AI091476NIAID NIH HHS R37 AI 50529NIAID NIH HHS T32 AI055400NIH HHS P51 OD011132NIH HHS P51 OD011133
6 · The paper itself

Abstract

unlabelledBroadly cross-reactive neutralizing antibodies (bNabs) represent powerful tools to combat human immunodeficiency virus type 1 (HIV-1) infection. Here, we examined whether HIV-1-specific bNabs are capable of cross-neutralizing distantly related simian immunodeficiency viruses (SIVs) infecting central (Pan troglodytes troglodytes) (SIVcpzPtt) and eastern (Pan troglodytes schweinfurthii) (SIVcpzPts) chimpanzees (n = 11) as well as western gorillas (Gorilla gorilla gorilla) (SIVgor) (n = 1). We found that bNabs directed against the CD4 binding site (n = 10), peptidoglycans at the base of variable loop 3 (V3) (n = 5), and epitopes at the interface of surface (gp120) and membrane-bound (gp41) envelope glycoproteins (n = 5) failed to neutralize SIVcpz and SIVgor strains. In addition, apex V2-directed bNabs (n = 3) as well as llama-derived (heavy chain only) antibodies (n = 6) recognizing both the CD4 binding site and gp41 epitopes were either completely inactive or neutralized only a fraction of SIVcpzPtt strains. In contrast, one antibody targeting the membrane-proximal external region (MPER) of gp41 (10E8), functional CD4 and CCR5 receptor mimetics (eCD4-Ig, eCD4-Ig(mim2), CD4-218.3-E51, and CD4-218.3-E51-mim2), as well as mono- and bispecific anti-human CD4 (iMab and LM52) and CCR5 (PRO140, PRO140-10E8) receptor antibodies neutralized >90% of SIVcpz and SIVgor strains with low-nanomolar (0.13 to 8.4 nM) potency. Importantly, the latter antibodies blocked virus entry not only in TZM-bl cells but also in Cf2Th cells expressing chimpanzee CD4 and CCR5 and neutralized SIVcpz in chimpanzee CD4(+) T cells, with 50% inhibitory concentrations (IC50s) ranging from 3.6 to 40.5 nM. These findings provide new insight into the protective capacity of anti-HIV-1 bNabs and identify candidates for further development to combat SIVcpz infection. IMPORTANCE: SIVcpz is widespread in wild-living chimpanzees and can cause AIDS-like immunopathology and clinical disease. HIV-1 infection of humans can be controlled by antiretroviral therapy; however, treatment of wild-living African apes with current drug regimens is not feasible. Nonetheless, it may be possible to curb the spread of SIVcpz in select ape communities using vectored immunoprophylaxis and/or therapy. Here, we show that antibodies and antibody-like inhibitors developed to combat HIV-1 infection in humans are capable of neutralizing genetically diverse SIVcpz and SIVgor strains with considerable breadth and potency, including in primary chimpanzee CD4(+) T cells. These reagents provide an important first step toward translating intervention strategies currently developed to treat and prevent AIDS in humans to SIV-infected apes.

Indexed as

Cross ReactionsAnimalsAntibodies, NeutralizingGorilla gorillaHIV AntibodiesHumansInhibitory Concentration 50Neutralization TestsPan troglodytesSimian Acquired Immunodeficiency SyndromeSimian Immunodeficiency VirusAntibodies, NeutralizingHIV Antibodies

Identifiers

PMID25900654
PMCPMC4453581
OpenAlexW2137535177

What OpenQuestion holds

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LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.