Evidence map›Paper›PMID 25900619›Full record

ArticleJournal of experimental botany2015

Zinc triggers a complex transcriptional and post-transcriptional regulation of the metal homeostasis gene FRD3 in Arabidopsis relatives.

Jean-Benoit Charlier, Catherine Polese, Cécile Nouet, Monique Carnol, Bernard Bosman, Ute Krämer, Patrick Motte, Marc Hanikenne

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
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  6. di-Cysteine Residues of theFrontiers in plant science · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Jean-Benoit CharlierFunctional Genomics and Plant Molecular Imaging, Center for Protein Engineering (CIP), Department of Life Sciences, University of Liège, B-4000 Liège, Belgium.
Catherine PoleseFunctional Genomics and Plant Molecular Imaging, Center for Protein Engineering (CIP), Department of Life Sciences, University of Liège, B-4000 Liège, Belgium.
Cécile NouetFunctional Genomics and Plant Molecular Imaging, Center for Protein Engineering (CIP), Department of Life Sciences, University of Liège, B-4000 Liège, Belgium.
Monique CarnolLaboratory of Plant and Microbial Ecology, Department of Biology, Ecology, Evolution, University of Liège, B-4000 Liège, Belgium.
Bernard BosmanLaboratory of Plant and Microbial Ecology, Department of Biology, Ecology, Evolution, University of Liège, B-4000 Liège, Belgium.
Ute KrämerDepartment of Plant Physiology, Ruhr University Bochum, D-44801 Bochum, Germany.
Patrick MotteFunctional Genomics and Plant Molecular Imaging, Center for Protein Engineering (CIP), Department of Life Sciences, University of Liège, B-4000 Liège, Belgium PhytoSYSTEMS, University of Liège, B-4000 Liège, Belgium.
Marc HanikenneFunctional Genomics and Plant Molecular Imaging, Center for Protein Engineering (CIP), Department of Life Sciences, University of Liège, B-4000 Liège, Belgium PhytoSYSTEMS, University of Liège, B-4000 Liège, Belgium marc.hanikenne@ulg.ac.be.
University of Liège · BERuhr University Bochum · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In Arabidopsis thaliana, FRD3 (FERRIC CHELATE REDUCTASE DEFECTIVE 3) plays a central role in metal homeostasis. FRD3 is among a set of metal homeostasis genes that are constitutively highly expressed in roots and shoots of Arabidopsis halleri, a zinc hyperaccumulating and hypertolerant species. Here, we examined the regulation of FRD3 by zinc in both species to shed light on the evolutionary processes underlying the evolution of hyperaccumulation in A. halleri. We combined gene expression studies with the use of β-glucuronidase and green fluorescent protein reporter constructs to compare the expression profile and transcriptional and post-transcriptional regulation of FRD3 in both species. The AtFRD3 and AhFRD3 genes displayed a conserved expression profile. In A. thaliana, alternative transcription initiation sites from two promoters determined transcript variants that were differentially regulated by zinc supply in roots and shoots to favour the most highly translated variant under zinc-excess conditions. In A. halleri, a single transcript variant with higher transcript stability and enhanced translation has been maintained. The FRD3 gene thus undergoes complex transcriptional and post-transcriptional regulation in Arabidopsis relatives. Our study reveals that a diverse set of mechanisms underlie increased gene dosage in the A. halleri lineage and illustrates how an environmental challenge can alter gene regulation.

Indexed as

Genes, Plant5' Untranslated RegionsArabidopsisArabidopsis ProteinsGene Expression ProfilingGene Expression Regulation, PlantGenotypeHomeostasisMembrane Transport ProteinsProtein BiosynthesisRNA, MessengerRNA StabilityTranscription, GeneticTranscription Initiation SiteZinc5' Untranslated RegionsArabidopsis ProteinsFRD3 protein, ArabidopsisMembrane Transport ProteinsRNA, MessengerZincAlternative promoterArabidopsis hallerigene regulationtranscript stabilitytranslationzinc homeostasis.

Identifiers

PMID25900619
PMCPMC4473987
OpenAlexW2112956284

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.