Evidence map›Paper›PMID 25899688›Full record

ArticleMucosal immunology2016

High-dimensional immune profiling of total and rotavirus VP6-specific intestinal and circulating B cells by mass cytometry.

N Nair, E W Newell, C Vollmers, S R Quake, J M Morton, M M Davis, X S He, H B Greenberg

Open access · bronzeAbstract read
In one paragraph

Article in Mucosal immunology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 40 citations in OpenAlex.

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  19. The human intestinal B-cell response.Mucosal immunology · 2016
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

N NairDepartment of Medicine, Stanford University, Stanford, California, USA.
E W NewellDepartment of Microbiology and Immunology, Stanford University, Stanford, California, USA.
C VollmersDepartment of Bioengineering, Stanford University, Stanford, California, USA.
S R QuakeDepartment of Bioengineering, Stanford University, Stanford, California, USA.
J M MortonDepartment of Surgery, Stanford University School of Medicine, Stanford, California, USA.
M M DavisDepartment of Microbiology and Immunology, Stanford University, Stanford, California, USA.
X S HeDepartment of Medicine, Stanford University, Stanford, California, USA.
H B GreenbergDepartment of Medicine, Stanford University, Stanford, California, USA.
Stanford University · USSingapore Immunology Network · SG

Funding

Using a tonsil organoid system to probe conditions for the induction of protective antibody and T cell responses to influenza.U19AI057229 · NIAID · STANFORD UNIVERSITY · PI Mark Morris Davis · 2003 to 2026
$88.5M
Spectrum Stanford Center for clinical and Translational Research and EducationUL1TR001085 · NCATS · STANFORD UNIVERSITY · PI CULLEN, MARK RICHARD, GREENBERG, HARRY BERNARD · 2013 to 2017
$37.1M
Vaccination and infection: indicators of immunological health and responsivenessU19AI090019 · NIAID · STANFORD UNIVERSITY · PI DAVIS, MARK MORRIS · 2010 to 2015
$17.3M
VIRAL GASTROENTERITIS--BASIS OF PROTECTION AND VIRULENCER01AI021362 · NIAID · STANFORD UNIVERSITY · PI GREENBERG, HARRY BERNARD · 1989 to 2014
$5.4M
VIRAL GASTROENTERITIS--BASIS OF PROTECTION AND VIRULENCER37AI021362 · NIAID · STANFORD UNIVERSITY · PI GREENBERG, HARRY BERNARD · 1994 to 2003
$789k
Viral Gastroenteritis: Basis of Virulence and ProtectionR56AI021362 · NIAID · PALO ALTO VETERANS INSTIT FOR RESEARCH · PI GREENBERG, HARRY BERNARD · 2015 to 2015
$506k
Rotavirus: Studies of the Effectors and Mechanisms of Heterotypic Humoral Immunity in Human Intestinal Epithelial CellsI01BX000158 · VA · VETERANS ADMIN PALO ALTO HEALTH CARE SYS · PI GREENBERG, HARRY BERNARD · 2011 to 2022
–
VIRAL GASTROENTERITIS: BASIS OF VIRULENCE AND PROTECTIONR22AI021362 · NIAID · STANFORD UNIVERSITY · PI GREENBERG, HARRY BERNARD · 1985 to 1991
–
BLRD VA I01 BX000158NCATS NIH HHS UL1 TR001085NIAID NIH HHS AI021362NIAID NIH HHS AI057229NIAID NIH HHS R01 AI021362NIAID NIH HHS R37 AI021362NIAID NIH HHS R56 AI021362NIAID NIH HHS U19 AI057229NIAID NIH HHS U19 AI090019
6 · The paper itself

Abstract

In-depth phenotyping of human intestinal antibody secreting cells (ASCs) and their precursors is important for developing improved mucosal vaccines. We used single-cell mass cytometry to simultaneously analyze 34 differentiation and trafficking markers on intestinal and circulating B cells. In addition, we labeled rotavirus (RV) double-layered particles with a metal isotope and characterized B cells specific to the RV VP6 major structural protein. We describe the heterogeneity of the intestinal B-cell compartment, dominated by ASCs with some phenotypic and transcriptional characteristics of long-lived plasma cells. Using principal component analysis, we visualized the phenotypic relationships between major B-cell subsets in the intestine and blood, and revealed that IgM(+) memory B cells (MBCs) and naive B cells were phenotypically related as were CD27(-) MBCs and switched MBCs. ASCs in the intestine and blood were highly clonally related, but associated with distinct trajectories of phenotypic development. VP6-specific B cells were present among diverse B-cell subsets in immune donors, including naive B cells, with phenotypes representative of the overall B-cell pool. These data provide a high dimensional view of intestinal B cells and the determinants regulating humoral memory to a ubiquitous, mucosal pathogen at steady-state.

Indexed as

Immunity, MucosalAnimalsAntigens, ViralB-Lymphocyte SubsetsCapsid ProteinsCell DifferentiationCell LineCell LineageCell MovementChlorocebus aethiopsCytokinesEpithelial CellsGene Expression ProfilingGene Expression RegulationHost-Pathogen InteractionsHumansAntigens, ViralCapsid ProteinsCytokinesImmunoglobulin MTumor Necrosis Factor Receptor Superfamily, Member 7VP6 protein, Rotavirus

Identifiers

PMID25899688
PMCPMC4618273
OpenAlexW2030410828

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.