Evidence map›Paper›PMID 25899327›Full record

ArticleParasitology research2015

A specific indel marker for the Philippines Schistosoma japonicum revealed by analysis of mitochondrial genome sequences.

Juan Li, Fen Chen, Hiromu Sugiyama, David Blair, Rui-Qing Lin, Xing-Quan Zhu

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In one paragraph

Article in Parasitology research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors at 6 institutions in 3 countries.

Juan LiInstitute of Animal Health, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, Guangdong Province, People's Republic of China.
Fen Chen
Hiromu Sugiyama
David Blair
Rui-Qing Lin
Xing-Quan Zhu
Guangdong Academy of Agricultural Sciences · CNJames Cook University · AULanzhou Veterinary Research Institute · CNNational Institute of Infectious Diseases · JPSouth China Agricultural University · CNXiangnan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the present study, near-complete mitochondrial (mt) genome sequences for Schistosoma japonicum from different regions in the Philippines and Japan were amplified and sequenced. Comparisons among S. japonicum from the Philippines, Japan, and China revealed a geographically based length difference in mt genomes, but the mt genomic organization and gene arrangement were the same. Sequence differences among samples from the Philippines and all samples from the three endemic areas were 0.57-2.12 and 0.76-3.85 %, respectively. The most variable part of the mt genome was the non-coding region. In the coding portion of the genome, protein-coding genes varied more than rRNA genes and tRNAs. The near-complete mt genome sequences for Philippine specimens were identical in length (14,091 bp) which was 4 bp longer than those of S. japonicum samples from Japan and China. This indel provides a unique genetic marker for S. japonicum samples from the Philippines. Phylogenetic analyses based on the concatenated amino acids of 12 protein-coding genes showed that samples of S. japonicum clustered according to their geographical origins. The identified mitochondrial indel marker will be useful for tracing the source of S. japonicum infection in humans and animals in Southeast Asia.

Indexed as

Genome, HelminthGenome, MitochondrialAnimalsBase SequenceChinaGene OrderHelminth ProteinsHumansINDEL MutationJapanMolecular Sequence DataPhilippinesPhylogenySchistosoma japonicumSchistosomiasis japonicaSequence Analysis, DNAHelminth Proteins

Identifiers

PMID25899327
OpenAlexW2129415102

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.