Evidence map›Paper›PMID 25899320›Full record

ArticlePlant biotechnology journal2016

Transcript profiling of jasmonate-elicited Taxus cells reveals a β-phenylalanine-CoA ligase.

Karla Ramírez-Estrada, Teresa Altabella, Miriam Onrubia, Elisabeth Moyano, Cedric Notredame, Lidia Osuna, Robin Vanden Bossche, Alain Goossens, Rosa M Cusido, Javier Palazon

Open access · bronzeAbstract read
In one paragraph

Article in Plant biotechnology journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 53 citations in OpenAlex.

  1. Review
  2. Recent advances inFrontiers in plant science · 2026
    Review
  3. Article
  4. Article
  5. Transcriptome and Metabolome Analyses ofPlants (Basel, Switzerland) · 2025
    Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Karla Ramírez-EstradaSecció de Fisiologia Vegetal, Facultat de Farmacia, Universitat de Barcelona, Barcelona, Spain.
Teresa AltabellaSecció de Fisiologia Vegetal, Facultat de Farmacia, Universitat de Barcelona, Barcelona, Spain.
Miriam OnrubiaDepartament de Ciències Experimentals i de Salut, Universitat Pompeu Fabra, Barcelona, Spain.
Elisabeth MoyanoDepartament de Ciències Experimentals i de Salut, Universitat Pompeu Fabra, Barcelona, Spain.
Cedric NotredameDepartament de Ciències Experimentals i de Salut, Universitat Pompeu Fabra, Barcelona, Spain.
Lidia OsunaCentro de Investigación Biomédica del Sur, Instituto Mexicano del Seguro Social (IMSS), Xochitepec, Mexico.
Robin Vanden BosscheDepartment of Plant Systems Biology, VIB, Ghent, Belgium.
Alain GoossensDepartment of Plant Systems Biology, VIB, Ghent, Belgium.
Rosa M CusidoSecció de Fisiologia Vegetal, Facultat de Farmacia, Universitat de Barcelona, Barcelona, Spain.
Javier PalazonSecció de Fisiologia Vegetal, Facultat de Farmacia, Universitat de Barcelona, Barcelona, Spain.
Universitat de Barcelona · ESUniversitat Pompeu Fabra · ESGhent University · BECenter for Research in Agricultural Genomics · ESMexican Social Security Institute · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant cell cultures constitute eco-friendly biotechnological platforms for the production of plant secondary metabolites with pharmacological activities, as well as a suitable system for extending our knowledge of secondary metabolism. Despite the high added value of taxol and the importance of taxanes as anticancer compounds, several aspects of their biosynthesis remain unknown. In this work, a genomewide expression analysis of jasmonate-elicited Taxus baccata cell cultures by complementary DNA-amplified fragment length polymorphism (cDNA-AFLP) indicated a correlation between an extensive elicitor-induced genetic reprogramming and increased taxane production in the targeted cultures. Subsequent in silico analysis allowed us to identify 15 genes with a jasmonate-induced differential expression as putative candidates for genes encoding enzymes involved in five unknown steps of taxane biosynthesis. Among them, the TB768 gene showed a strong homology, including a very similar predicted 3D structure, with other genes previously reported to encode acyl-CoA ligases, thus suggesting a role in the formation of the taxol lateral chain. Functional analysis confirmed that the TB768 gene encodes an acyl-CoA ligase that localizes to the cytoplasm and is able to convert β-phenylalanine, as well as coumaric acid, into their respective derivative CoA esters. β-phenylalanyl-CoA is attached to baccatin III in one of the last steps of the taxol biosynthetic pathway. The identification of this gene will contribute to the establishment of sustainable taxol production systems through metabolic engineering or synthetic biology approaches.

Indexed as

Gene Expression ProfilingAmino Acid SequenceAmplified Fragment Length Polymorphism AnalysisBridged-Ring CompoundsChromatography, High Pressure LiquidComputer SimulationCyclopentanesCytosolDNA, ComplementaryGene Expression Regulation, PlantGenes, PlantGenetic Association StudiesLigasesModels, MolecularOxylipinsPaclitaxelBridged-Ring CompoundsCyclopentanesDNA, Complementaryjasmonic acidLigasesOxylipinsPaclitaxelPhenylalaninePlant ProteinsRNA, MessengertaxaneTaxoidscDNA-AFLPcell culturesCoA ligasemethyl jasmonateTaxolTaxus baccataβ-phenylalanine

Identifiers

PMID25899320
PMCPMC11389183
OpenAlexW2103664363

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.