Evidence map›Paper›PMID 25898808›Full record

ArticleAmerican journal of medical genetics. Part A2015

Whole exome sequencing identifies de novo heterozygous CAV1 mutations associated with a novel neonatal onset lipodystrophy syndrome.

Abhimanyu Garg, Martin Kircher, Miguel Del Campo, R Stephen Amato, Anil K Agarwal, University of Washington Center for Mendelian Genomics

Abstract read
In one paragraph

Article in American journal of medical genetics. Part A, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed, 1 pooled it
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 1 synthesis or guideline pooled it, 79 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Severe Insulin Resistance Syndromes: Clinical Spectrum and Management.International journal of molecular sciences · 2025
    Review
  6. Review
  7. Article
  8. Lipodystrophic Laminopathies: From Dunnigan Disease to Progeroid Syndromes.International journal of molecular sciences · 2024
    Review
  9. Role of Na/K-ATPase α1 caveolin-binding motif in adipogenesis.American journal of physiology. Cell physiology · 2024
    Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Review
  15. Molecular genetics of pulmonary hypertension in children.Current opinion in genetics & development · 2022
    Review
  16. Caveolar dysfunction and lipodystrophies.European journal of endocrinology · 2022
    Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 2 countries.

Abhimanyu GargDepartment of Internal Medicine and the Center for Human Nutrition, Division of Nutrition and Metabolic Diseases, UT Southwestern Medical Center, Dallas, Texas.
Martin KircherDepartment of Genome Sciences, University of Washington, Seattle, Washington.
Miguel Del CampoDivision of Clinical and Molecular Genetics, Hospital Vall d'Hebron, Universitat Pompeu Fabra, CIBERER, Barcelona, Spain.
R Stephen AmatoDepartment of Pediatrics, Division of Genetics and Metabolism, University of Kentucky, Lexington, Kentucky.
Anil K AgarwalDepartment of Internal Medicine and the Center for Human Nutrition, Division of Nutrition and Metabolic Diseases, UT Southwestern Medical Center, Dallas, Texas.
University of Washington Center for Mendelian Genomics
Centre for Biomedical Network Research on Rare Diseases · ESSouthwestern Medical CenterThe University of Texas Southwestern Medical Center · USUniversity of Kentucky · USUniversity of Washington · US

Funding

NORTH AND CENTRAL TEXAS CTSA FOR PEDIATRIC RESEARCHUL1RR024982 · NCRR · UT SOUTHWESTERN MEDICAL CENTER · PI TOTO, ROBERT DANIEL · 2007 to 2011
$27.9M
UT Southwestern Center for Translational Medicine (UL1/KL2/TL1)UL1TR001105 · NCATS · UT SOUTHWESTERN MEDICAL CENTER · PI TOTO, ROBERT DANIEL · 2013 to 2017
$24.5M
UW Center for Mendelian GenomicsU54HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, NICKERSON, DEBORAH A · 2012 to 2015
$20.0M
UW Center for Mendelian GenomicsUM1HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, LEAL, SUZANNE M · 2016 to 2020
$15.3M
Genetic and Metabolic Basis of Familial LipodystrophiesR01DK105448 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI Abhimanyu Garg · 2015 to 2026
$6.5M
GENETIC AND METABOLIC BASIS OF FAMILIAL LIPODYSTROPHIESR01DK054387 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI GARG, ABHIMANYU · 1999 to 2011
$6.4M
NCATS NIH HHS UL1 TR001105NCRR NIH HHS UL-1-RR024982NCRR NIH HHS UL1 RR024982NHGRI NIH HHS 1U54HG006493NHGRI NIH HHS U54 HG006493NHGRI NIH HHS UM1 HG006493NIDDK NIH HHS R01 DK054387NIDDK NIH HHS R01 DK105448NIDDK NIH HHS R01-DK54387
6 · The paper itself

Abstract

Despite remarkable progress in identifying causal genes for many types of genetic lipodystrophies in the last decade, the molecular basis of many extremely rare lipodystrophy patients with distinctive phenotypes remains unclear. We conducted whole exome sequencing of the parents and probands from six pedigrees with neonatal onset of generalized loss of subcutaneous fat with additional distinctive phenotypic features and report de novo heterozygous null mutations, c.424C>T (p.Q142*) and c.479_480delTT (p.F160*), in CAV1 in a 7-year-old male and a 3-year-old female of European origin, respectively. Both the patients had generalized fat loss, thin mottled skin and progeroid features at birth. The male patient had cataracts requiring extraction at age 30 months and the female patient had pulmonary arterial hypertension. Dermal fibroblasts of the female patient revealed negligible CAV1 immunofluorescence staining compared to control but there were no differences in the number and morphology of caveolae upon electron microscopy examination. Based upon the similarities in the clinical features of these two patients, previous reports of CAV1 mutations in patients with lipodystrophies and pulmonary hypertension, and similar features seen in CAV1 null mice, we conclude that these variants are the most likely cause of one subtype of neonatal onset generalized lipodystrophy syndrome.

Indexed as

HeterozygoteMutationCaveolin 1Cells, CulturedExomeFemaleHumansInfant, NewbornLipodystrophyMalePedigreeCAV1 protein, humanCaveolin 1cataractcaveolin 1lipodystrophyprogeroid syndromepulmonary hypertension

Identifiers

PMID25898808
PMCPMC5086082
OpenAlexW2070561138

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.