Evidence map›Paper›PMID 25897633›Full record

ArticleScientific reports2015

Structural basis for cooperative oxygen binding and bracelet-assisted assembly of Lumbricus terrestris hemoglobin.

Wei-Ting Chen, Yu-Chuen Chen, Horng-Huei Liou, Chih-Yu Chao

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
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  5. Purification ofACS biomaterials science & engineering · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Wei-Ting Chen1] Department of Physics, National Taiwan University, Taipei 10617, Taiwan [2] Biomedical &Molecular Imaging Center, National Taiwan University College of Medicine, Taipei 10051, Taiwan.
Yu-Chuen ChenBiomedical &Molecular Imaging Center, National Taiwan University College of Medicine, Taipei 10051, Taiwan.
Horng-Huei LiouDivision of Neurology, National Taiwan University Hospital, Taipei 10002, Taiwan.
Chih-Yu Chao1] Department of Physics, National Taiwan University, Taipei 10617, Taiwan [2] Graduate Institute of Applied Physics, National Taiwan University, Taipei 10617, Taiwan [3] Biomedical &Molecular Imaging Center, National Taiwan University College of Medicine, Taipei 10051, Taiwan.
National Taiwan University · TWNational Taiwan University Hospital · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The iron-containing hemoglobins (Hbs) are essential proteins to serve as oxygen transporters in the blood. Among various kinds of Hbs, the earthworm Hbs are the champions in carrying oxygen due to not only their large size but also the unusually high cooperativity of ligand binding. However, the cooperative oxygen binding mechanisms are still mostly unknown. Here we report the cryo-electron microscopy structure of Lumbricus terrestris Hb in its native, oxygenated state at 9.1 Å resolution, showing remarkable differences from the carbon monoxide-binding X-ray structure. Our structural analysis first indicates that the cooperative ligand binding of L. terrestris Hb requires tertiary and quaternary transitions in the heme pocket and a global subunit movement facilitated by intra-ring and inter-ring contacts. Moreover, the additional sinusoidal bracelet provides the confirmation for the long-standing debate about the additional electron densities absent in the X-ray crystal structure.

Indexed as

AnimalsBinding SitesCarbon DioxideCryoelectron MicroscopyCrystallography, X-RayHemeHemoglobinsOligochaetaOxygenProtein BindingProtein Structure, TertiaryCarbon DioxideHemeHemoglobinsOxygen

Identifiers

PMID25897633
PMCPMC5383013
OpenAlexW2094968011

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.