ArticleNucleic acids research2015
The BioMart community portal: an innovative alternative to large, centralized data repositories.
Abstract read
In one paragraph
Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 454 papers, 1 of them a synthesis that pooled it.
0numbers the graph read from it
0cells of the map it votes in
454citing papers in PubMed, 1 pooled it
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
454 citing papers in PubMed, 1 synthesis or guideline pooled it.
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- Coupling of response biomarkers between tumor and peripheral blood in patients undergoing chemoimmunotherapy.Cell reports. Medicine · 2025Trial
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- Nanoparticle-enriched mass spectrometry proteomics in British South Asians identifies links between genetic variants, plasma protein levels and disease risk.Nature genetics · 2026Article
- Isoform-specific m6A deposition and coordinated splicing shape mammalian transcriptome evolution.Nature communications · 2026Article
- Stem cell control and cancer initiation by an autocrine, injury-activated Igf complex.bioRxiv : the preprint server for biology · 2026Article
- Genome-Wide Identification of Genomic Regions Associated with Body Weight and Morphometric Traits in Awassi Sheep.Animals : an open access journal from MDPI · 2026Article
- Research Progress in Artificial Intelligence-Assisted Preparation of High-Quality Biomaterials.ACS omega · 2026Review
- GlycoRNAdb: a database of glycoRNA sequences, structures, abundance, and glycan information across tissues and cell lines.Nucleic acids research · 2026Article
- Neural Organoids Protect Engineered Heart Tissues From Glucolipotoxicity by Transferring Versican in a Co-Culture System.Cell proliferation · 2026Article
- Serum withdrawal establishes a stress-dominant entry state during myogenic differentiation.Frontiers in cell and developmental biology · 2026Article
- In Silico Analysis of the Dual Role of Tumor Microenvironment on Colon Cancer Subtypes.Cancer informatics · 2026Article
- Population structure and genome-wide association study of body conformation traits of two native goat breeds in China.Animal bioscience · 2026Article
- Genome-wide identifications of regulatory variants influencing milk fat percentage in Chinese Holstein cow.BMC genomics · 2025Article
- HNRNPC reprograms cancer metabolism to drive acquired chemoresistance in colorectal cancer by repressing of Nrf2/SLC7A11-dependent ferroptosis.Cell communication and signaling : CCS · 2025Article
- The Diverse Genetic Landscape of Hearing Impairment in South African Families.Clinical genetics · 2025Article
- Long-read RNA-seq demarcates cis- and trans-directed alternative RNA splicing.Nature communications · 2025Article
- Genetic determinants of monocyte splicing are enriched for disease susceptibility loci.Nature communications · 2025Article
- Multi-locus genome-wide association study reveals genomic regions underlying root system architecture traits early growth stage of sorghum germplasm.Scientific reports · 2025Article
394 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
105 authors.
Damian SmedleyWellcome Trust Sanger Institute, Welcome Trust Genome Campus, Hinxton, CB10 1SD, UK.
Syed HaiderThe Weatherall Institute Of Molecular Medicine, University of Oxford, Oxford, OX3 9DS, UK.
Steffen DurinckGenentech, Inc. 1 DNA Way South San Francisco, CA 94080, USA.
Luca PandiniCenter for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy.
Paolo ProveroCenter for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy Dept of Molecular Biotechnology and Health Sciences University of Turin, Italy.
James AllenEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.
Olivier ArnaizInstitute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris Sud, 1 avenue de la terrasse, 91198 Gif sur Yvette, France.
Mohammad Hamza AwedhDepartment of Electrical and Computer Engineering, Faculty of Engineering, King Abdulaziz University, Jeddah, Saudi Arabia.
Richard BaldockMRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital, Edinburgh, EH4 2XU, UK.
Giulia BarbieraCenter for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy.
Philippe BardouSigenae, INRA, Castanet-Tolosan, France.
Tim BeckDepartment of Genetics, University of Leicester, University Road, Leicester, LE1 7RH, UK.
Andrew BlakeMRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, OX11 0RD, UK.
Merideth BonierbaleInternational Potato Center (CIP), Lima, 1558, Peru.
Anthony J BrookesDepartment of Genetics, University of Leicester, University Road, Leicester, LE1 7RH, UK.
Gabriele BucciCenter for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy.
Iwan BuettiCenter for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy.
Sarah BurgeEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.
Cédric CabauSigenae, INRA, Castanet-Tolosan, France.
Joseph W CarlsonDepartment of Energy, Joint Genome Institute, Walnut Creek, USA.
Claude ChelalaCentre for Molecular Oncology, Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
Charalambos ChrysostomouDepartment of Genetics, University of Leicester, University Road, Leicester, LE1 7RH, UK.
Davide CittaroCenter for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy.
Olivier CollinIRISA-INRIA, Campus de Beaulieu 35042 Rennes, France.
Raul CordovaInternational Potato Center (CIP), Lima, 1558, Peru.
Rosalind J CuttsCentre for Molecular Oncology, Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
Erik DassiLaboratory of Translational Genomics, Centre for Integrative Biology, University of Trento, Trento, Italy.
Alex Di GenovaCenter for Mathematical Modeling and Center for Genome Regulation, University of Chile, Beauchef 851, 7th floor, Chile.
Anis DjariPlate-forme bio-informatique Genotoul, Mathématiques et Informatique Appliquées de Toulouse, INRA, Castanet-Tolosan, France.
Anthony EspositoOncology Computational Biology, Pfizer, La Jolla, USA.
Heather EstrellaOncology Computational Biology, Pfizer, La Jolla, USA.
Eduardo EyrasCatalan Institute for Research and Advanced Studies (ICREA), Passeig Lluis Companys 23, E-08010 Barcelona, Spain Universitat Pompeu Fabra, Dr Aiguader 88 E-08003 Barcelona, Spain.
Julio Fernandez-BanetOncology Computational Biology, Pfizer, La Jolla, USA.
Simon ForbesWellcome Trust Sanger Institute, Welcome Trust Genome Campus, Hinxton, CB10 1SD, UK.
Robert C FreeDepartment of Genetics, University of Leicester, University Road, Leicester, LE1 7RH, UK.
Takatomo FujisawaKasuza DNA Research Institute, Chiba, 292-0818, Japan.
Emanuela GadaletaCentre for Molecular Oncology, Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
Jose M Garcia-ManteigaCenter for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy.
David GoodsteinDepartment of Energy, Joint Genome Institute, Walnut Creek, USA.
Kristian GrayHUGO Gene Nomenclature Committee (HGNC), European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK.
José Afonso Guerra-AssunçãoCentre for Molecular Oncology, Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
Bernard HaggartyMRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital, Edinburgh, EH4 2XU, UK.
Dong-Jin HanMedicinal Bioconvergence Research Center, College of Pharmacy, Seoul National University, Seoul 151-742, Republic of Korea Department of Molecular Medicine and Biopharmaceutical Sciences, Seoul National University, Seoul 151-742, Republic of Korea.
Byung Woo HanResearch Institute of Pharmaceutical Sciences, College of Pharmacy, Seoul National University, Seoul 151-742, Republic of Korea Information Center for Bio-pharmacological Network, Seoul National University, Suwon 443-270, Republic of Korea.
Todd HarrisOntario Institute for Cancer Research, Toronto, M5G 0A3, Canada.
Jayson HarshbargerRIKEN Center for Life Science Technologies (CLST), Division of Genomic Technologies (DGT), Kanagawa, 230-0045, Japan.
Robert K HastingsDepartment of Genetics, University of Leicester, University Road, Leicester, LE1 7RH, UK.
Richard D HayesDepartment of Energy, Joint Genome Institute, Walnut Creek, USA.
Claire HoedePlate-forme bio-informatique Genotoul, Mathématiques et Informatique Appliquées de Toulouse, INRA, Castanet-Tolosan, France.
Shen HuSchool of Dentistry and Dental Research Institute, University of California Los Angeles (UCLA), Los Angeles, CA 90095-1668, USA.
Zhi-Liang HuIowa State Univeristy, USA.
Lucie HutchinsMouse Genomic Informatics Group, The Jackson Laboratory, Bar Harbor, ME 04609, USA.
Zhengyan KanOncology Computational Biology, Pfizer, La Jolla, USA.
Hideya KawajiRIKEN Center for Life Science Technologies (CLST), Division of Genomic Technologies (DGT), Kanagawa, 230-0045, Japan RIKEN Preventive Medicine and Diagnosis Innovation Program, Saitama 351-0198, Japan.
Aminah KelietINRA URGI Centre de Versailles, bâtiment 18 Route de Saint Cyr 78026 Versailles, France.
Arnaud KerhornouEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.
Sunghoon KimMedicinal Bioconvergence Research Center, College of Pharmacy, Seoul National University, Seoul 151-742, Republic of Korea Department of Molecular Medicine and Biopharmaceutical Sciences, Seoul National University, Seoul 151-742, Republic of Korea.
Rhoda KinsellaEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.
Christophe KloppPlate-forme bio-informatique Genotoul, Mathématiques et Informatique Appliquées de Toulouse, INRA, Castanet-Tolosan, France.
Lei KongCenter for Bioinformatics, State Key Laboratory of Protein and Plant Gene Research, College of Life Sciences, Peking University, Beijing, 100871, P.R. China.
Daniel LawsonVectorBase, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK.
Dejan LazarevicCenter for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy.
Ji-Hyun LeeMedicinal Bioconvergence Research Center, College of Pharmacy, Seoul National University, Seoul 151-742, Republic of Korea Research Institute of Pharmaceutical Sciences, College of Pharmacy, Seoul National University, Seoul 151-742, Republic of Korea Information Center for Bio-pharmacological Network, Seoul National University, Suwon 443-270, Republic of Korea.
Thomas LetellierINRA URGI Centre de Versailles, bâtiment 18 Route de Saint Cyr 78026 Versailles, France.
Chuan-Yun LiInstitute of Molecular Medicine, Peking University, Beijing, China.
Pietro LioComputer Laboratory, University of Cambridge, Cambridge, CB3 0FD, UK.
Chu-Jun LiuInstitute of Molecular Medicine, Peking University, Beijing, China.
Jie LuoEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.
Alejandro MaassCenter for Mathematical Modeling and Center for Genome Regulation, University of Chile, Beauchef 851, 7th floor, Chile Department of Mathematical Engineering, University of Chile, Av. Beauchef 851, 5th floor, Santiago, Chile.
Jerome MariettePlate-forme bio-informatique Genotoul, Mathématiques et Informatique Appliquées de Toulouse, INRA, Castanet-Tolosan, France.
Thomas MaurelEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.
Stefania MerellaCenter for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy.
Azza Mostafa MohamedDepartament of Biochemistry, Faculty of Science for Girls, King Abdulaziz University, Jeddah, Saudi Arabia.
Francois MoreewsSigenae, INRA, Castanet-Tolosan, France.
Ibounyamine NabihoudinePlate-forme bio-informatique Genotoul, Mathématiques et Informatique Appliquées de Toulouse, INRA, Castanet-Tolosan, France.
Nelson NdegwaDepartment of Medical Epidemiology and Biostatistics, Karolinska Institutet, PO Box 281, 17177 Stockholm, Sweden.
Céline NoirotPlate-forme bio-informatique Genotoul, Mathématiques et Informatique Appliquées de Toulouse, INRA, Castanet-Tolosan, France.
Cristian Perez-LlamasUniversitat Pompeu Fabra, Dr Aiguader 88 E-08003 Barcelona, Spain.
Michael PrimigInserm U1085 IRSET, University of Rennes 1, 35042 Rennes, France.
Alessandro QuattroneLaboratory of Translational Genomics, Centre for Integrative Biology, University of Trento, Trento, Italy.
Hadi QuesnevilleINRA URGI Centre de Versailles, bâtiment 18 Route de Saint Cyr 78026 Versailles, France.
Davide RambaldiCenter for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy.
James ReecyIowa State Univeristy, USA.
Michela RibaCenter for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy.
Steven RosanoffEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.
Amna Ali SaddiqDepartment of Biological Sciences, Faculty of Science for Girls, King Abdulaziz University, Jeddah, Saudi Arabia.
Elisa SalasInternational Potato Center (CIP), Lima, 1558, Peru.
Olivier SallouIRISA-INRIA, Campus de Beaulieu 35042 Rennes, France.
Rebecca ShepherdWellcome Trust Sanger Institute, Welcome Trust Genome Campus, Hinxton, CB10 1SD, UK.
Reinhard SimonInternational Potato Center (CIP), Lima, 1558, Peru.
Linda SperlingInstitute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris Sud, 1 avenue de la terrasse, 91198 Gif sur Yvette, France.
William SpoonerCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA Eagle Genomics Ltd., Babraham Research Campus, Cambridge, CB22 3AT, UK.
Daniel M StainesEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.
Delphine SteinbachINRA URGI Centre de Versailles, bâtiment 18 Route de Saint Cyr 78026 Versailles, France.
Kevin StoneMouse Genomic Informatics Group, The Jackson Laboratory, Bar Harbor, ME 04609, USA.
Elia StupkaCenter for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy.
Jon W TeagueWellcome Trust Sanger Institute, Welcome Trust Genome Campus, Hinxton, CB10 1SD, UK.
Abu Z Dayem UllahCentre for Molecular Oncology, Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
Jun WangCenter for Bioinformatics, State Key Laboratory of Protein and Plant Gene Research, College of Life Sciences, Peking University, Beijing, 100871, P.R. China.
Doreen WareCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Marie Wong-ErasmusHuman Longevity, Inc. 10835 Road to the Cure 140 San Diego, CA 92121, USA.
Ken Youens-ClarkCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Amonida ZadissaEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.
Shi-Jian ZhangInstitute of Molecular Medicine, Peking University, Beijing, China.
Arek KasprzykCenter for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia Arek.Kasprzyk@gmail.com.
Funding
Nomenclature of Human and Vertebrate GenesU41HG003345 · NHGRI · EUROPEAN MOLECULAR BIOLOGY LABORATORY · PI BIRNEY, EWAN, BRUFORD, ELSPETH · 2013 to 2017
$2.4MMedical Research Council MC_PC_U127527203NHGRI NIH HHS U41 HG003345Wellcome Trust 077012/Z/05/ZWellcome Trust 095908Wellcome Trust WT098051
Abstract
The BioMart Community Portal (www.biomart.org) is a community-driven effort to provide a unified interface to biomedical databases that are distributed worldwide. The portal provides access to numerous database projects supported by 30 scientific organizations. It includes over 800 different biological datasets spanning genomics, proteomics, model organisms, cancer data, ontology information and more. All resources available through the portal are independently administered and funded by their host organizations. The BioMart data federation technology provides a unified interface to all the available data. The latest version of the portal comes with many new databases that have been created by our ever-growing community. It also comes with better support and extensibility for data analysis and visualization tools. A new addition to our toolbox, the enrichment analysis tool is now accessible through graphical and web service interface. The BioMart community portal averages over one million requests per day. Building on this level of service and the wealth of information that has become available, the BioMart Community Portal has introduced a new, more scalable and cheaper alternative to the large data stores maintained by specialized organizations.
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Database Management SystemsGenomicsHumansInternetNeoplasmsProteomics
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.