Evidence map›Paper›PMID 25897117›Full record

ArticleNucleic acids research2015

Single-cell, locus-specific bisulfite sequencing (SLBS) for direct detection of epimutations in DNA methylation patterns.

Silvia Gravina, Shireen Ganapathi, Jan Vijg

Abstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Reuniting philosophy and science to advance cancer research.Biological reviews of the Cambridge Philosophical Society · 2023
    Article
  5. Article
  6. Pathways of DNA Demethylation.Advances in experimental medicine and biology · 2022
    Article
  7. Article
  8. DNA methylation studies in cattle.Journal of applied genetics · 2021
    Review
  9. Review
  10. Review
  11. Article
  12. Mapping chromatin modifications at the single cell level.Development (Cambridge, England) · 2019
    Review
  13. Extensive exploration of T cell heterogeneity in cancers by single cell sequencing.Chinese journal of cancer research = Chung-kuo yen cheng yen chiu · 2019
    Article
  14. Review
  15. Review
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Silvia GravinaDepartment of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA silvia.gravina@einstein.yu.edu.
Shireen GanapathiDepartment of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Jan VijgDepartment of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA silvia.gravina@einstein.yu.edu.

Funding

WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI THOMAS E ROHAN · 1985 to 2026
$111.2M
Stochastic aspects of aging (5 of 11)RL1AG032117 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI VIJG, JAN · 2007 to 2011
$2.0M
Single-Cell Functional GenomicsR01AG034421 · NIA · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI VIJG, JAN · 2009 to 2012
$1.4M
NCI NIH HHS P30 CA013330NIA NIH HHS AG032117NIA NIH HHS AG034421NIA NIH HHS R01 AG034421NIA NIH HHS RL1 AG032117
6 · The paper itself

Abstract

Stochastic epigenetic changes drive biological processes, such as development, aging and disease. Yet, epigenetic information is typically collected from millions of cells, thereby precluding a more precise understanding of cell-to-cell variability and the pathogenic history of epimutations. Here we present a novel procedure for directly detecting epimutations in DNA methylation patterns using single-cell, locus-specific bisulfite sequencing (SLBS). We show that within gene promoter regions of mouse hepatocytes the epimutation rate is two orders of magnitude higher than the mutation rate.

Indexed as

DNA MethylationEpigenesis, GeneticSulfitesAnimalsCells, CulturedGenetic LociMiceMice, Inbred C57BLMutation RatePromoter Regions, GeneticSequence Analysis, DNASingle-Cell Analysishydrogen sulfiteSulfites

Identifiers

PMID25897117
PMCPMC4538804

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.