Evidence map›Paper›PMID 25897077›Full record

ArticleThe Journal of biological chemistry2015

Monitoring Oxidative Folding of a Single Protein Catalyzed by the Disulfide Oxidoreductase DsbA.

Thomas B Kahn, Julio M Fernández, Raul Perez-Jimenez

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 27 citations in OpenAlex.

  1. Force-regulated chaperone activity of BiP/ERdj3 is opposite to their homologs DnaK/DnaJ.Protein science : a publication of the Protein Society · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 2 countries.

Thomas B KahnFrom the Department of Biochemistry and Molecular Biophysics, Columbia University Medical Center, New York, New York 10032.
Julio M FernándezDepartment of Biological Sciences, Columbia University, New York, New York 10027.
Raul Perez-JimenezCentro de Investigación Cooperativa (CIC) nanoGUNE, 20018 Donostia-San Sebastian, Spain, and IKERBASQUE, Basque Foundation for Science, 48013 Bilbao, Spain r.perezjimenez@nanogune.eu.
CIC nanoGUNE · ESColumbia University · USColumbia University Irving Medical Center · US

Funding

Single Molecule Studies of Titin ElasticityR01HL061228 · NHLBI · MAYO CLINIC COLL OF MEDICINE, ROCHESTER · PI FERNANDEZ, JULIO M · 1999 to 2017
$7.4M
TRAINING PROGRAM IN MOLECULAR BIOPHYSICST32GM008281 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PALMER, ARTHUR G · 1988 to 2017
$5.4M
NHLBI NIH HHS HL061228NHLBI NIH HHS R01 HL061228NIGMS NIH HHS T32 GM008281NIGMS NIH HHS T32GM008281
6 · The paper itself

Abstract

Oxidative folding, the process by which proteins fold and acquire disulfide bonds concurrently, is of critical importance for a wide range of biological processes. Generally, this process is catalyzed by oxidoreductase enzymes that facilitate oxidation and also bear chaperone functionality. Although this process has been well described qualitatively, fine yet important details remain obscured by a limited quantitative perspective, arising from the limitations in the application of bulk biochemical methods to the study of oxidative folding. In this work, we have applied single molecule force spectroscopy techniques to monitor in real time the process of oxidative folding as catalyzed by DsbA, the enzyme solely responsible for the catalysis of oxidative folding in the bacterial periplasm. We provide a quantitative and detailed description of the catalytic mechanism utilized by DsbA that offers insight into the entire sequence of events that occurs in the periplasm from the unfolded-reduced state to the folded-oxidized protein. We have compared our results with those of protein disulfide-isomerase, the eukaryotic counterpart of DsbA, allowing us to devise a general mechanism for oxidative folding that also reflects upon the physiological functions and demands of these enzymes in vivo.

Indexed as

Protein FoldingEscherichia coliEscherichia coli ProteinsMicroscopy, Atomic ForceOxidation-ReductionProtein Disulfide-IsomerasesdsbA protein, E coliEscherichia coli ProteinsProtein Disulfide-Isomerasesatomic force microscopy (AFM)disulfideenzyme kineticsEscherichia coli (E. coli)oxidation-reduction (redox)protein foldingsingle molecule biophysics

Identifiers

PMID25897077
PMCPMC4505519
OpenAlexW2086752770

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.