Evidence map›Paper›PMID 25897022›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Olfactory receptor genes expressed in distinct lineages are sequestered in different nuclear compartments.

Kyoung-Hye Yoon, Tobias Ragoczy, Zhonghua Lu, Kunio Kondoh, Donghui Kuang, Mark Groudine, Linda B Buck

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.

  1. Pooled it
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  5. Review
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  15. Review
  16. Capturing genome folds in single sensory neurons.Nature structural & molecular biology · 2019
    Article
  17. Article
  18. Article
  19. Spatial genome organization and cognition.Nature reviews. Neuroscience · 2016
    Review
  20. Combinatorial effects of odorants on mouse behavior.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Kyoung-Hye YoonHoward Hughes Medical Institute, Basic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109; and.
Tobias RagoczyHoward Hughes Medical Institute, Basic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109; and Basic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109.
Zhonghua LuHoward Hughes Medical Institute, Basic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109; and.
Kunio KondohHoward Hughes Medical Institute, Basic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109; and.
Donghui KuangHoward Hughes Medical Institute, Basic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109; and.
Mark GroudineBasic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109.
Linda B BuckHoward Hughes Medical Institute, Basic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109; and lbuck@fhcrc.org.
Fred Hutch Cancer Center · USCancer Research Center · USHoward Hughes Medical Institute · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
MAINTENANCE OF GENE EXPRESSION IN THE RED CELL LINEAGER01HL065440 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GROUDINE, MARK T · 2000 to 2018
$12.4M
FUNCTION OF HUMAN &MOUSE B GLOBIN LOCUS CONTROL REGIONSR37DK044746 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GROUDINE, MARK T · 1997 to 2016
$12.3M
Molecular mechanisms of olfaction in mammalsR01DC009324 · NIDCD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BUCK, LINDA B · 2008 to 2012
$1.9M
Understanding the function of trace amine-associated (TAARs)F32DC011699 · NIDCD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI YOON, KYOUNG-HYE · 2011 to 2013
$115k
Howard Hughes Medical InstituteNCI NIH HHS P30 CA015704NHLBI NIH HHS R01 HL065440NIDCD NIH HHS F32 DC011699NIDCD NIH HHS R01 DC009324NIDDK NIH HHS R37 DK044746
6 · The paper itself

Abstract

The olfactory system translates a vast array of volatile chemicals into diverse odor perceptions and innate behaviors. Odor detection in the mouse nose is mediated by 1,000 different odorant receptors (ORs) and 14 trace amine-associated receptors (TAARs). ORs are used in a combinatorial manner to encode the unique identities of myriad odorants. However, some TAARs appear to be linked to innate responses, raising questions about regulatory mechanisms that might segregate OR and TAAR expression in appropriate subsets of olfactory sensory neurons (OSNs). Here, we report that OSNs that express TAARs comprise at least two subsets that are biased to express TAARs rather than ORs. The two subsets are further biased in Taar gene choice and their distribution within the sensory epithelium, with each subset preferentially expressing a subgroup of Taar genes within a particular spatial domain in the epithelium. Our studies reveal one mechanism that may regulate the segregation of Olfr (OR) and Taar expression in different OSNs: the sequestration of Olfr and Taar genes in different nuclear compartments. Although most Olfr genes colocalize near large central heterochromatin aggregates in the OSN nucleus, Taar genes are located primarily at the nuclear periphery, coincident with a thin rim of heterochromatin. Taar-expressing OSNs show a shift of one Taar allele away from the nuclear periphery. Furthermore, examination of hemizygous mice with a single Taar allele suggests that the activation of a Taar gene is accompanied by an escape from the peripheral repressive heterochromatin environment to a more permissive interior chromatin environment.

Indexed as

AllelesAnimalsCell LineageCell NucleusChromosomes, Artificial, BacterialCrosses, GeneticFemaleGene Expression RegulationHeterochromatinIn Situ HybridizationIn Situ Hybridization, FluorescenceLamin Type AMaleMiceMice, Inbred C57BLMice, TransgenicHeterochromatinLamin Type AReceptors, Odorantnuclear organizationolfactory receptor genesTaar genes

Identifiers

PMID25897022
PMCPMC4426396
OpenAlexW2029059441

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.