Evidence map›Paper›PMID 25896894›Full record

ArticleBMC genomics2015

Histone modifications induced by MDV infection at early cytolytic and latency phases.

Apratim Mitra, Juan Luo, Yanghua He, Yulan Gu, Huanmin Zhang, Keji Zhao, Kairong Cui, Jiuzhou Song

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Apratim MitraDepartment of Animal & Avian Sciences, University of Maryland, College Park, MD, 20742, USA. apratim.mitra@gmail.com.
Juan LuoDepartment of Animal & Avian Sciences, University of Maryland, College Park, MD, 20742, USA. juanluo2008@gmail.com.
Yanghua HeDepartment of Animal & Avian Sciences, University of Maryland, College Park, MD, 20742, USA. yh.he.cn@gmail.com.
Yulan GuDepartment of Animal Breeding and Genetics, College of Animal Sciences, China Agricultural University, Beijing, 100193, P.R. China. gylzhc@gmail.com.
Huanmin ZhangUSDA, ARS, Avian Disease and Oncology Laboratory, East Lansing, MI, 48823, USA. huanmin.zhang@ars.usda.gov.
Keji ZhaoSystems Biology Center, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, MD, 20892, USA. zhaok@nhlbi.nih.gov.
Kairong CuiSystems Biology Center, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, MD, 20892, USA. cuik@nhlbi.nih.gov.
Jiuzhou SongDepartment of Animal & Avian Sciences, University of Maryland, College Park, MD, 20742, USA. songj88@umd.edu.
University of Maryland, College Park · USNational Institutes of Health · USAgricultural Research Service · USChina Agricultural University · CN

Funding

Genome-wide mapping of histone modificationsZIAHL005801 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI ZHAO, KEJI · 2009 to 2025
$24.0M
6 · The paper itself

Abstract

backgroundMarek's disease (MD) is a highly contagious, lymphomatous disease of chickens induced by a herpesvirus, Marek's disease virus (MDV) that is the cause of major annual losses to the poultry industry. MD pathogenesis involves multiple stages including an early cytolytic phase and latency, and transitions between these stages are governed by several host and environmental factors. The success of vaccination strategies has led to the increased virulence of MDV and selective breeding of naturally resistant chickens is seen as a viable alternative. While multiple gene expression studies have been performed in resistant and susceptible populations, little is known about the epigenetic effects of infection.

resultsIn this study, we investigated temporal chromatin signatures induced by MDV by analyzing early cytolytic and latent phases of infection in the bursa of Fabricius of MD-resistant and -susceptible birds. Major global variations in chromatin marks were observed at different stages of MD in the two lines. Differential H3K27me3 marks were associated with immune-related pathways, such as MAP kinase signaling, focal adhesion and neuroactive ligand receptor interaction, and suggested varying degrees of silencing in response to infection. Immune-related microRNAs, e.g. gga-miR-155 and gga-miR-10b, bore chromatin signatures, which suggested their contribution to MD-susceptibility. Finally, several members of the focal adhesion pathway, e.g. THBS4 and ITGA1, showed marked concordance between gene expression and chromatin marks indicating putative epigenetic regulation in response to MDV infection.

conclusionOur comprehensive analysis of chromatin signatures, therefore, revealed further clues about the epigenetic effects of MDV infection although further studies are necessary to elucidate the functional implications of the observed variations in histone modifications.

Indexed as

AnimalsChickensChromatinChromatin ImmunoprecipitationDisease ResistanceEpigenesis, GeneticFocal AdhesionsGenomeHistonesMAP Kinase Signaling SystemMardivirusMarek DiseaseMethylationMicroRNAsSequence Analysis, DNAChromatinHistonesMicroRNAs

Identifiers

PMID25896894
PMCPMC4404578
OpenAlexW2031142200

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.