Evidence map›Paper›PMID 25896697›Full record

ArticleAntimicrobial agents and chemotherapy2015

Influence of linker length and composition on enzymatic activity and ribosomal binding of neomycin dimers.

Derrick Watkins, Sunil Kumar, Keith D Green, Dev P Arya, Sylvie Garneau-Tsodikova

Open access · bronzeAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

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  13. Tobramycin Variants with Enhanced Ribosome-Targeting Activity.Chembiochem : a European journal of chemical biology · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Derrick WatkinsNubad LLC, Greenville, South Carolina, USA.
Sunil KumarDepartment of Chemistry, Clemson University, Clemson, South Carolina, USA.
Keith D GreenDepartment of Pharmaceutical Sciences, University of Kentucky, BioPharm Complex, Lexington, Kentucky, USA.
Dev P AryaNubad LLC, Greenville, South Carolina, USA Department of Chemistry, Clemson University, Clemson, South Carolina, USA dparya@clemson.edu sylviegtsodikova@uky.edu.
Sylvie Garneau-TsodikovaDepartment of Pharmaceutical Sciences, University of Kentucky, BioPharm Complex, Lexington, Kentucky, USA dparya@clemson.edu sylviegtsodikova@uky.edu.
Nubad (United States) · USUniversity of Kentucky · USClemson University · US

Funding

Novel aminoglycoside adjuvants and stand-alone agents to combat tuberculosisR01AI090048 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GARNEAU-TSODIKOVA, SYLVIE · 2011 to 2021
$4.4M
A Rapid assay for RNA targeted drugs: Instrumentation SupplementR42GM097917 · NIGMS · NUBAD, LLC · PI ARYA, DEV PRIYA · 2014 to 2015
$1.4M
A novel assay for RNA targeted drugsR41GM097917 · NIGMS · NUBAD, LLC · PI ARYA, DEV PRIYA · 2011 to 2011
$286k
NIAID NIH HHS AI090048NIAID NIH HHS R01 AI090048NIGMS NIH HHS GM097917NIGMS NIH HHS R41 GM097917NIGMS NIH HHS R42 GM097917
6 · The paper itself

Abstract

The human and bacterial A site rRNA binding as well as the aminoglycoside-modifying enzyme (AME) activity against a series of neomycin B (NEO) dimers is presented. The data indicate that by simple modifications of linker length and composition, substantial differences in rRNA selectivity and AME activity can be obtained. We tested five different AMEs with dimeric NEO dimers that were tethered via triazole, urea, and thiourea linkages. We show that triazole-linked dimers were the worst substrates for most AMEs, with those containing the longer linkers showing the largest decrease in activity. Thiourea-linked dimers that showed a decrease in activity by AMEs also showed increased bacterial A site binding, with one compound (compound 14) even showing substantially reduced human A site binding. The urea-linked dimers showed a substantial decrease in activity by AMEs when a conformationally restrictive phenyl linker was introduced. The information learned herein advances our understanding of the importance of the linker length and composition for the generation of dimeric aminoglycoside antibiotics capable of avoiding the action of AMEs and selective binding to the bacterial rRNA over binding to the human rRNA.

Indexed as

Anti-Bacterial AgentsBacteriaBinding, CompetitiveBinding SitesDimerizationHumansMicrobial Sensitivity TestsNeomycinProtein ConformationRibosomesRNA, RibosomalStructure-Activity RelationshipThioureaTriazolesUreaAnti-Bacterial AgentsNeomycinRNA, RibosomalThioureaTriazolesUrea

Identifiers

PMID25896697
PMCPMC4468663
OpenAlexW2044596250

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.