Evidence map›Paper›PMID 25896609›Full record

ArticleJournal of the American Society of Nephrology : JASN2015

Genetic Background is a Key Determinant of Glomerular Extracellular Matrix Composition and Organization.

Michael J Randles, Adrian S Woolf, Jennifer L Huang, Adam Byron, Jonathan D Humphries, Karen L Price, Maria Kolatsi-Joannou, Sophie Collinson, Thomas Denny, David Knight and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of the American Society of Nephrology : JASN, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it, 50 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Brain vascular basement membrane: Comparison of human and mouse brain at the transcriptomic and proteomic levels.Matrix biology : journal of the International Society for Matrix Biology · 2025
    Article
  5. Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Tripartite Separation of Glomerular Cell Types and Proteomes from Reporter-Free Mice.Journal of the American Society of Nephrology : JASN · 2021
    Article
  13. Article
  14. Article
  15. Complexities of the glomerular basement membrane.Nature reviews. Nephrology · 2021
    Review
  16. RecessiveScience advances · 2021
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Michael J RandlesWellcome Trust Centre for Cell-Matrix Research, Faculty of Life Sciences, University of Manchester, Manchester, United Kingdom; Institute of Human Development, Faculty of Medical and Human Sciences, University of Manchester, Manchester, United Kingdom;
Adrian S WoolfInstitute of Human Development, Faculty of Medical and Human Sciences, University of Manchester, Manchester, United Kingdom;
Jennifer L HuangDevelopmental Biology and Cancer Program, Institute of Child Health, University College London, London, United Kingdom;
Adam ByronEdinburgh Cancer Research United Kingdom Centre, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, United Kingdom; and.
Jonathan D HumphriesWellcome Trust Centre for Cell-Matrix Research, Faculty of Life Sciences, University of Manchester, Manchester, United Kingdom;
Karen L PriceDevelopmental Biology and Cancer Program, Institute of Child Health, University College London, London, United Kingdom;
Maria Kolatsi-JoannouDevelopmental Biology and Cancer Program, Institute of Child Health, University College London, London, United Kingdom;
Sophie CollinsonWellcome Trust Centre for Cell-Matrix Research, Faculty of Life Sciences, University of Manchester, Manchester, United Kingdom;
Thomas DennyWellcome Trust Centre for Cell-Matrix Research, Faculty of Life Sciences, University of Manchester, Manchester, United Kingdom; Institute of Human Development, Faculty of Medical and Human Sciences, University of Manchester, Manchester, United Kingdom;
David KnightWellcome Trust Centre for Cell-Matrix Research, Faculty of Life Sciences, University of Manchester, Manchester, United Kingdom;
Aleksandr MironovWellcome Trust Centre for Cell-Matrix Research, Faculty of Life Sciences, University of Manchester, Manchester, United Kingdom;
Toby StarborgWellcome Trust Centre for Cell-Matrix Research, Faculty of Life Sciences, University of Manchester, Manchester, United Kingdom;
Ron KorstanjeThe Jackson Laboratory, Bar Harbor, Maine.
Martin J HumphriesWellcome Trust Centre for Cell-Matrix Research, Faculty of Life Sciences, University of Manchester, Manchester, United Kingdom;
David A LongDevelopmental Biology and Cancer Program, Institute of Child Health, University College London, London, United Kingdom;
Rachel LennonWellcome Trust Centre for Cell-Matrix Research, Faculty of Life Sciences, University of Manchester, Manchester, United Kingdom; Institute of Human Development, Faculty of Medical and Human Sciences, University of Manchester, Manchester, United Kingdom; Rachel.Lennon@manchester.ac.uk.
University of Manchester · GBUniversity College London · GBWellcome Centre for Cell-Matrix Research · GBJackson Laboratory · US

Funding

Diabetes UK 13/0004763Medical Research Council MR/J003638/1Wellcome Trust 088785Wellcome Trust 090006Wellcome Trust 092015Wellcome Trust 097820/Z/11/B
6 · The paper itself

Abstract

Glomerular disease often features altered histologic patterns of extracellular matrix (ECM). Despite this, the potential complexities of the glomerular ECM in both health and disease are poorly understood. To explore whether genetic background and sex determine glomerular ECM composition, we investigated two mouse strains, FVB and B6, using RNA microarrays of isolated glomeruli combined with proteomic glomerular ECM analyses. These studies, undertaken in healthy young adult animals, revealed unique strain- and sex-dependent glomerular ECM signatures, which correlated with variations in levels of albuminuria and known predisposition to progressive nephropathy. Among the variation, we observed changes in netrin 4, fibroblast growth factor 2, tenascin C, collagen 1, meprin 1-α, and meprin 1-β. Differences in protein abundance were validated by quantitative immunohistochemistry and Western blot analysis, and the collective differences were not explained by mutations in known ECM or glomerular disease genes. Within the distinct signatures, we discovered a core set of structural ECM proteins that form multiple protein-protein interactions and are conserved from mouse to man. Furthermore, we found striking ultrastructural changes in glomerular basement membranes in FVB mice. Pathway analysis of merged transcriptomic and proteomic datasets identified potential ECM regulatory pathways involving inhibition of matrix metalloproteases, liver X receptor/retinoid X receptor, nuclear factor erythroid 2-related factor 2, notch, and cyclin-dependent kinase 5. These pathways may therefore alter ECM and confer susceptibility to disease.

Indexed as

AlbuminuriaAnimalsCollagen Type ICyclin-Dependent Kinase 5Extracellular MatrixFemaleFibroblast Growth Factor 2Genetic Predisposition to DiseaseGlomerular Basement MembraneKidney DiseasesKidney GlomerulusLiver X ReceptorsMaleMatrix MetalloproteinasesMetalloendopeptidasesMiceCollagen Type ICyclin-Dependent Kinase 5Fibroblast Growth Factor 2Liver X ReceptorsMatrix Metalloproteinasesmeprin AMetalloendopeptidasesNerve Growth FactorsNetrinsNfe2l2 protein, mouseNF-E2-Related Factor 2Ntn4 protein, mouseOrphan Nuclear ReceptorsRNATenascinalbuminuriacell-matrix-interactionsextracellular matrix

Identifiers

PMID25896609
PMCPMC4657824
OpenAlexW2125338019

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.