Evidence map›Paper›PMID 25891902›Full record

ArticleBiochimica et biophysica acta2015

Integration of signaling in the kinome: Architecture and regulation of the αC Helix.

Susan S Taylor, Andrey S Shaw, Natarajan Kannan, Alexandr P Kornev

Abstract read
In one paragraph

Article in Biochimica et biophysica acta, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
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  4. Review
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  9. Review
  10. Article
  11. Crystal structure of the phosphorylatedActa biochimica et biophysica Sinica · 2022
    Article
  12. Article
  13. Article
  14. Activation loop phosphorylation of a non-RD receptor kinase initiates plant innate immune signaling.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Lipid-targeting pleckstrin homology domain turns its autoinhibitory face toward the TEC kinases.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Susan S TaylorDepartment of Pharmacology, University of California, San Diego, 9500 Gilman Drive, 0654, La Jolla, CA 92093, San Diego, USA; Department of Chemistry & Biochemistry, University of California, San Diego, USA.
Andrey S ShawDepartment of Pathology and Immunology, Washington University School of Medicine, 660 South Euclid, Box 8118, St. Louis, MO 63110, USA.
Natarajan KannanDepartment of Biochemistry & Molecular Biology, University of Georgia, Athens, GA 30602, USA.
Alexandr P KornevDepartment of Pharmacology, University of California, San Diego, 9500 Gilman Drive, 0654, La Jolla, CA 92093, San Diego, USA.
University of California, San Diego · USUniversity of Georgia · USWashington University in St. Louis · US

Funding

Protein Kinase: Primary Structure and cAMP InteractionsR01GM019301 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TAYLOR, SUSAN S. · 1985 to 2013
$3.4M
PROTEIN KINASE: PRIMARY STRUCTURE AND CAMP INTERACTIONR37GM019301 · NIGMS · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI TAYLOR, SUSAN S · 1995 to 2004
$2.0M
Howard Hughes Medical InstituteNIGMS NIH HHS GM19301NIGMS NIH HHS R01 GM019301NIGMS NIH HHS R37 GM019301
6 · The paper itself

Abstract

Eukaryotic protein kinases have evolved to be highly regulated and dynamic molecular switches that are typically kept in an inactive state and then activated in response to extracellular signals. The hallmark signature of an active kinase is a hydrophobic spine called the regulatory (R) spine, which consists of four residues, two in the N-lobe and two in the C-lobe. RS1 is in the catalytic loop, RS2 is the Phe in the DFG motif, RS3 is at the C-terminus of the αC-Helix, and RS4 is at the beginning of β4. Assembly of the R-spine is typically facilitated by phosphorylation of the Activation Loop. The assembled R-spine brings together all of the functional motifs that are essential for transferring the phosphate from ATP to a tethered protein substrate. This includes the G-Loop, which anchors the ATP, the catalytic loop, the DFG motif fused to the Activation Loop, and the αC-Helix. We focus here on the properties of the αC-Helix showing 1) how residues communicate with different parts of the molecule, 2) how it is recruited to the active site as a consequence of assembling of the R-spine, and 3) how it is regulated by linkers/motifs/proteins that lie outside the conserved kinase core. This article is part of a Special Issue entitled: Inhibitors of Protein Kinases.

Indexed as

Protein Structure, SecondaryStructure-Activity RelationshipAdenosine TriphosphateAmino Acid MotifsCatalytic DomainEukaryotaPhosphorylationProtein KinasesSignal TransductionAdenosine TriphosphateProtein KinasescAMP-dependent protein kinase (PKA)Protein kinaseRegulatory spine (R-spine)αC-Helix

Identifiers

PMID25891902
PMCPMC4577442
OpenAlexW2093815936

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.