Evidence map›Paper›PMID 25890499›Full record

ArticleOncotarget2015

Quantitative phosphoproteome analysis of embryonic stem cell differentiation toward blood.

Manuela Piazzi, Andrew Williamson, Chia-Fang Lee, Stella Pearson, Georges Lacaud, Valerie Kouskoff, James A McCubrey, Lucio Cocco, Anthony D Whetton

Open access · diamondAbstract readComparative Study
In one paragraph

Article in Oncotarget, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Manuela PiazziCell Signaling Laboratory, Department of Biomedical Science (DIBINEM), University of Bologna, Italy.
Andrew WilliamsonStem Cell and Leukaemia Proteomics Laboratory, Manchester Academic Health Science Centre, The University of Manchester, Manchester, UK.
Chia-Fang LeeStem Cell and Leukaemia Proteomics Laboratory, Manchester Academic Health Science Centre, The University of Manchester, Manchester, UK.
Stella PearsonStem Cell Research Group, Manchester Academic Health Science Centre, University of Manchester, Manchester, UK.
Georges LacaudStem Cell Biology Group Paterson Institute for Cancer Research, Manchester Academic Health Science Centre, University of Manchester, Manchester, UK.
Valerie KouskoffStem Cell Research Group, Manchester Academic Health Science Centre, University of Manchester, Manchester, UK.
James A McCubreyDepartment of Microbiology and Immunology, Brody School of Medicine at East Carolina University, Greenville, NC, USA.
Lucio CoccoCell Signaling Laboratory, Department of Biomedical Science (DIBINEM), University of Bologna, Italy.
Anthony D WhettonStem Cell and Leukaemia Proteomics Laboratory, Manchester Academic Health Science Centre, The University of Manchester, Manchester, UK.
Manchester Academic Health Science Centre · GBUniversity of Bologna · ITCancer Research UK Manchester Institute · GBEast Carolina University · USUniversity of Manchester · GB

Funding

Biotechnology and Biological Sciences Research Council BB/F000499/1Biotechnology and Biological Sciences Research Council BB/I001794/1Cancer Research UK 12486Cancer Research UK 12487Cancer Research UK 19565
6 · The paper itself

Abstract

Murine embryonic stem (ES) cells can differentiate in vitro into three germ layers (endodermic, mesodermic, ectodermic). Studies on the differentiation of these cells to specific early differentiation stages has been aided by an ES cell line carrying the Green Fluorescent Protein (GFP) targeted to the Brachyury (Bry) locus which marks mesoderm commitment. Furthermore, expression of the Vascular Endothelial Growth Factor receptor 2 (Flk1) along with Bry defines hemangioblast commitment. Isobaric-tag for relative and absolute quantification (iTRAQ(TM)) and phosphopeptide enrichment coupled to liquid chromatography separation and mass spectrometry allow the study of phosphorylation changes occurring at different stages of ES cell development using Bry and Flk1 expression respectively. We identified and relatively quantified 37 phosphoentities which are modulated during mesoderm-induced ES cells differentiation, comparing epiblast-like, early mesoderm and hemangioblast-enriched cells. Among the proteins differentially phosphorylated toward mesoderm differentiation were: the epigenetic regulator Dnmt3b, the protein kinase GSK3b, the chromatin remodeling factor Smarcc1, the transcription factor Utf1; as well as protein specifically related to stem cell differentiation, as Eomes, Hmga2, Ints1 and Rif1. As most key factors regulating early hematopoietic development have also been implicated in various types of leukemia, understanding the post-translational modifications driving their regulation during normal development could result in a better comprehension of their roles during abnormal hematopoiesis in leukemia.

Indexed as

Cell DifferentiationProteomicsAnimalsBrachyury ProteinCell LineCell LineageChromatography, LiquidDatabases, ProteinEmbryonic Stem CellsFetal ProteinsGene Expression Regulation, DevelopmentalGenes, ReporterHemangioblastsMass SpectrometryMicePhosphoproteinsBrachyury ProteinFetal ProteinsPhosphoproteinsT-Box Domain ProteinsVascular Endothelial Growth Factor Receptor-2hemangioblastiTRAQnucleusphosphoproteomic

Identifiers

PMID25890499
PMCPMC4484429
OpenAlexW2134757783

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.