Evidence map›Paper›PMID 25890349›Full record

ArticleMicrobial cell factories2015

Effect of plasmid replication deregulation via inc mutations on E. coli proteome & simple flux model analysis.

Jonathan Meade, Patrick Bartlow, Ram Narayan Trivedi, Parvez Akhtar, Mohammad M Ataai, Saleem A Khan, Michael M Domach

Abstract read
In one paragraph

Article in Microbial cell factories, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jonathan MeadeDepartment Chemical Engineering, Carnegie Mellon University, 15213, Pittsburgh, PA, USA. jwmeade@andrew.cmu.edu.
Patrick BartlowDepartment Chemical Engineering, University of Pittsburgh, 15219, Pittsburgh, PA, USA. pab66@pitt.edu.
Ram Narayan TrivediMicrobiology & Molecular Genetics, University of Pittsburgh School of Medicine, 15219, Pittsburgh, PA, USA. rnt88@pitt.edu.
Parvez AkhtarMicrobiology & Molecular Genetics, University of Pittsburgh School of Medicine, 15219, Pittsburgh, PA, USA. paa13@pitt.edu.
Mohammad M AtaaiDepartment Chemical Engineering, University of Pittsburgh, 15219, Pittsburgh, PA, USA. ataai@pitt.edu.
Saleem A KhanMicrobiology & Molecular Genetics, University of Pittsburgh School of Medicine, 15219, Pittsburgh, PA, USA. Khan@pitt.edu.
Michael M DomachDepartment Chemical Engineering, Carnegie Mellon University, 15213, Pittsburgh, PA, USA. md0q@andrew.cmu.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

When the replication of a plasmid based on sucrose selection is deregulated via the inc1 and inc2 mutations, high copy numbers (7,000 or greater) are attained while the growth rate on minimal medium is negligibly affected. Adaptions were assumed to be required in order to sustain the growth rate. Proteomics indicated that indeed a number of adaptations occurred that included increased expression of ribosomal proteins and 2-oxoglutarate dehydrogenase. The operating space prescribed by a basic flux model that maintained phenotypic traits (e.g. growth, byproducts, etc.) within typical bounds of resolution was consistent with the flux implications of the proteomic changes.

Indexed as

Escherichia coliEscherichia coli ProteinsGene DosageGlucoseKetoglutarate Dehydrogenase ComplexModels, BiologicalMutationPhenotypePlasmidsProteomeRibosomal ProteinsEscherichia coli ProteinsGlucoseKetoglutarate Dehydrogenase ComplexProteomeRibosomal Proteins

Identifiers

PMID25890349
PMCPMC4357208

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.