Evidence map›Paper›PMID 25890046›Full record

ArticleMicrobial cell factories2015

Metabolic and genetic factors affecting the productivity of pyrimidine nucleoside in Bacillus subtilis.

Hui Zhu, Shao-Mei Yang, Zhao-Min Yuan, Rui Ban

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.1field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 44 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Hui ZhuDepartment of Biochemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300072, China. zhuhui0505@hotmail.com.
Shao-Mei YangDepartment of Biochemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300072, China. shaomei@tju.edu.cn.
Zhao-Min YuanDepartment of Biochemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300072, China. yuanzhaomin@tju.edu.cn.
Rui BanDepartment of Biochemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300072, China. banrui@tju.edu.cn.
Tianjin University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCytidine and uridine are produced commercially by Bacillus subtilis. The production strains of cytidine and uridine were both derivatives from mutagenesis. However, the exact metabolic and genetic factors affecting the productivity remain unknown. Genetic engineering may be a promising approach to identify and confirm these factors.

resultsWith the deletion of the cdd and hom genes, and the deregulation of the pyr operon in Bacillus subtilis168, the engineered strain produced 200.9 mg/L cytidine, 14.9 mg/L uridine and 960.1 mg/L uracil. Then, the overexpressed prs gene led to a dramatic increase of uridine by 25.9 times along with a modest increase of cytidine. Furthermore, the overexpressed pyrG gene improved the production of cytidine, uridine and uracil by 259.5%, 11.2% and 68.8%, respectively. Moreover, the overexpression of the pyrH gene increasesd the yield of cytidine by 40%, along with a modest augments of uridine and uracil. Lastly, the deletion of the nupC-pdp gene resulted in a doubled production of uridine up to 1684.6 mg/L, a 14.4% increase of cytidine to 1423 mg/L, and a 99% decrease of uracil to only 14.2 mg/L.

conclusionsThe deregulation of the pyr operon and the overexpression of the prs, pyrG and pyrH genes all contribute to the accumulation of pyrimidine nucleoside compounds in the medium. Among these factors, the overexpression of the pyrG and pyrH genes can particularly facilitate the production of cytidine. Meanwhile, the deletion of the nupC-pdp gene can obviously reduce the production of uracil and simultaneously improve the production of uridine.

Indexed as

Bacillus subtilisBacterial ProteinsBiomassCytidineCytidine DeaminaseFermentationGene DeletionGene Expression Regulation, BacterialHomoserine DehydrogenaseMetabolic EngineeringMutagenesisOperonPentosyltransferasesRepressor ProteinsReproducibility of ResultsReverse Transcriptase Polymerase Chain ReactionBacterial ProteinsCytidineCytidine DeaminaseHomoserine DehydrogenasePentosyltransferasesPyrR protein, bacteriaRepressor ProteinsUridine

Identifiers

PMID25890046
PMCPMC4403831
OpenAlexW1985889459

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.